Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1553 ATGGTCACATATCTCTCTCCCTCTCCACCTTCACATTCCAGTTCCATCTTCAAATTGGCAAATCCAAAGTCACCCATTTCAGCATCTTCTTTGAAGCTCAAAACCCACTTCTCAAAACCACTTTTTTCTCCTTCATTTGCTTCCCCAAACTTGAACTGCACCACCAAGAAGCAGTTCTTACATGGCAACAACAATAGTAGATTCAAAAATGCAAAAAGATTTGATTTTAGGACATGGGCTATTGCTGGATTTGATTATGGGAGCTTTGAGGGTCCTCAGTCCGTGATTGAAGCTGTTGCAGTTTTAACAGCAATCATTGTTGTTCATGAGAGTGGTCACTTCTTCGCTGCTTATCTCCAAGGAATCCATGTGAGTAAATTTTCAATTGGGTTTGGTCCAATTTTAGTTAAGCTCAATGCAAACAATGTAGAATATTCTATTAGAGCTTTTCCTCTTGGTGGCTTTGTTGGGTTTCCTGATAATGATCCAGAGAGTGATATTCCTATTGATGATAAAAATTTGCTTAAGAACAGACCAATATTGGATAGAGTCATTGTGGTTTCAGCTGGTGTTATTGCTAATATCATTTTTGCAATTGTAATTGTCTTTGTTCAAGTCATTGCTGTTGGTTTACCTGTGCCAGAGGTTTTTCCTGGTGTGGTTGTTCCTGAAGTTAAACCCTTCTCAGCTGCTTCTAGAGATGGTTTGCTTCCTGGTGATGTGATCCTTGAGGTCAATGGAAATGAGTTTCCTAAACCAGGTCCTAGTGCTGTTTCTGAAGTTGTTGATGTCATCAAGAAAAACCCCAAGAGATATGTTTTGCTTAAGGTTAAGAGGGGGGAGCAGAATTTTGAAATCGGGGTTACTCCGGATGAGAATTATGATAGAACTGGTAAGATTGGAGTTCAGCTAACACCAAATGTTAAGATAGCTAAGGTTAGGCCAAAGAATCTGATGGAAGCTATAAACTTTACTGGAAAAGAATTTTGGGGTCTTTCATCAAATGTTTTAGATGGCCTAAAGCAGACATTTTTTAACTTCTCCCAGACAGCTAGTAAGGTTTCGGGTCCTGTAGCGATTATTGCTGTTGGTGCGGAAGTTGCACGGTCAAACATTGATGGTCTCTACCAATTTGCCGCCTTACTCAATATTAACCTTGCGGTTATAAACCTTCTTCCTCTACCTGCATTGGATGGGGGTACGTTGGCACTGATCCTCGTTGAGGCTGCCAGGGGTGGGAGAAAGCTGCCTCTTGAAACGGAGCAACGAATCATGTCATCGGGAATTATGCTTGTTGTACTTCTGGGGTTATTCCTTATTGTTCGTGACACCTTAAACCTTGATTTTATCAAAGAGATATTGTAA 1365 0.4051 MVTYLSPSPPSHSSSIFKLANPKSPISASSLKLKTHFSKPLFSPSFASPNLNCTTKKQFLHGNNNSRFKNAKRFDFRTWAIAGFDYGSFEGPQSVIEAVAVLTAIIVVHESGHFFAAYLQGIHVSKFSIGFGPILVKLNANNVEYSIRAFPLGGFVGFPDNDPESDIPIDDKNLLKNRPILDRVIVVSAGVIANIIFAIVIVFVQVIAVGLPVPEVFPGVVVPEVKPFSAASRDGLLPGDVILEVNGNEFPKPGPSAVSEVVDVIKKNPKRYVLLKVKRGEQNFEIGVTPDENYDRTGKIGVQLTPNVKIAKVRPKNLMEAINFTGKEFWGLSSNVLDGLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAALLNINLAVINLLPLPALDGGTLALILVEAARGGRKLPLETEQRIMSSGIMLVVLLGLFLIVRDTLNLDFIKEIL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1553 454 CDD PDZ_metalloprotease 207 290 - -
Lan8g1553 454 Pfam PDZ domain 221 279 IPR041489 -
Lan8g1553 454 ProSiteProfiles PDZ domain profile. 219 280 IPR001478 GO:0005515
Lan8g1553 454 Pfam Peptidase family M50 99 435 IPR008915 GO:0004222|GO:0006508
Lan8g1553 454 Gene3D - 213 305 IPR036034 GO:0005515
Lan8g1553 454 SUPERFAMILY PDZ domain-like 179 282 IPR036034 GO:0005515
Lan8g1553 454 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 56 454 - -
Lan8g1553 454 CDD S2P-M50_PDZ_RseP-like 95 446 - -
Lan8g1553 454 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 56 454 IPR004387 GO:0004222|GO:0006508|GO:0016021
Lan8g1553 454 SMART pdz_new 193 281 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1553 Lan-Chr8 22558506 22560261 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1553 - - lang:109351773 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1553 8 22558506 22560261 Lan8g1553 8 22558506 22560261 ECH
Lan7g0422 7 2979397 2981180 Lan8g1553 8 22558506 22560261 LSH