Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1522 ATGGGGACAAGATCTTCAAAACGAAAAAACATTGCTCAAATATTAGACAATGAAGCTAAATCAGCCATTGATCGTATCACTGATCTCCCTGATGCTGTTCTTCATCACATACTTTTTCTCCTTCCCATCAAATGTGTAGCACAAATGAGTATTCTTTCTAAGAGATGGAAATTTCTTTGGTCCACTTTCCCAGACCTTGACTTCACAACCCTTAACCCATTTGAAATTTCTTCCAAAAATCTTAAATTTATGAACTATGACAAACATAGAAATCATCCCTTGGATACAGCACAAATGGATTTCATTACCCAAGTTTTTTCCATTCGTGACAAGCATTCAGACATTAGGATTCTTTGTTTTCGTGCCCGTTTGAGTTTTTCTAGATTAAACAGTTTGATTCGTAGTGCTATTAGGCATAATGTTAAAGAACTTGACATTGAAGTCACCACTTCTGTGACCACAGATGATTATTTCAACTTTCCTAGATGTGTTATAGGGAGTGAATCTTTAAGGGTCTTAAAATTAAAATCCGGTTTTCGTTTGCCACCATCATCTATTATGAGAGATGGGTTTCAATCTCTTCATACATTGTCACTTTCCCTAGTGATTTTGTATAATCAGCCTAATCTCTCTGATTTGTTCTCTGAATCATCATTTCCTTTGTTGAAAAAATTGCACCTAGATATGTGCTTTGGATTGAAATATCTCCATGTTGGTTGTCGGGGTCTTGAAGATTTGAGCTTAGAGAAATGTTTTCAGCTGCAAGGTTTGGATATCTCATGTGCAAAACTAGCAAAAATGAGAGTAACAAGTTGTTTTGATGCGTATAGTAAAAAGAGTTGGGTAAGAATCAATGCCCCAAAGCTTGAACATTTGTTTTGGCAATTTAATGCTGTTAGTGACACTACTATTTTTGAGCCTTCAAATTTCTTACGTGAGGCCTATGTTGGTCTCTTCATGCTGAATAGAGCTAATGGCATGGGTAAGGTTCAAAGTGTCAATGGTTTCTTGTCTGGACTATCTCATGCTGGTTCACTGATTCTTGAAAGCCAAACCTTTGAGATTCTATCAAACAATAACTTCTATATTCAGCCATTTTGTAATCTTAAATCATTGGAGCTGCATACTGGTTTCAAAAAAAGCAATGTTCAAGGATTAGCATGCCTATTCAGGAGCTCTCCAACACTTCATACTCTGATTCTCAAGATCACTAATGATCGTAAGATTGAAAGAAAACAATGGAATAGGGACTTATGGGACATGAGTAGCACGGAAGAAGAGCAGTATTGGGAATCTCAGATACCAACTCTAATGTCTTTCCTACAACACTTGAGATTGGTGAAAATCCATGGGTTTCTAGATTGTGAGAATGAAGTTACACTTGCAAAGTTTCTCCTCAAACATGGTAAGGCCTTAGAAGAAATGATATTATGTGCAGGAGATTGCAACGATAGAGATACTCTTAGAAGACAAAAAATAAGGTCGCAAATGATGGGATTTTCTTCGGCTTGTTCTAATGCAAAAGTGGCATTTAAGTAA 1539 0.3645 MGTRSSKRKNIAQILDNEAKSAIDRITDLPDAVLHHILFLLPIKCVAQMSILSKRWKFLWSTFPDLDFTTLNPFEISSKNLKFMNYDKHRNHPLDTAQMDFITQVFSIRDKHSDIRILCFRARLSFSRLNSLIRSAIRHNVKELDIEVTTSVTTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSIMRDGFQSLHTLSLSLVILYNQPNLSDLFSESSFPLLKKLHLDMCFGLKYLHVGCRGLEDLSLEKCFQLQGLDISCAKLAKMRVTSCFDAYSKKSWVRINAPKLEHLFWQFNAVSDTTIFEPSNFLREAYVGLFMLNRANGMGKVQSVNGFLSGLSHAGSLILESQTFEILSNNNFYIQPFCNLKSLELHTGFKKSNVQGLACLFRSSPTLHTLILKITNDRKIERKQWNRDLWDMSSTEEEQYWESQIPTLMSFLQHLRLVKIHGFLDCENEVTLAKFLLKHGKALEEMILCAGDCNDRDTLRRQKIRSQMMGFSSACSNAKVAFK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1522 512 Gene3D Ribonuclease Inhibitor 20 312 IPR032675 -
Lan8g1522 512 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Lan8g1522 512 Pfam F-box domain 27 61 IPR001810 GO:0005515
Lan8g1522 512 SMART 9598neu4hmm 438 512 IPR006566 -
Lan8g1522 512 PANTHER F-BOX PROTEIN-LIKE 20 457 - -
Lan8g1522 512 SUPERFAMILY RNI-like 124 464 - -
Lan8g1522 512 Pfam FBD 440 477 IPR006566 -
Lan8g1522 512 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 20 457 - -
Lan8g1522 512 SUPERFAMILY F-box domain 20 75 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1522 Lan-Chr8 22248254 22250858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1522 24 402 EF-hand Containing Proteins AT5G41840 24.460 1.51e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1522 - - ahf:114927451 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1522 8 22248254 22250858 Lan8g1522 8 22248254 22250858 ECH
Lan7g0444 7 3223206 3225803 Lan8g1522 8 22248254 22250858 LSH