Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0037 ATGCCTCTCCAGGCTTCTAATAAAACAATTTTGTCACTTGATTTTGACGATGAAGATGGCCCACTAACTTTTAAACGATACCCGTCCTCTAACAAAAAACAATTGCATTCAGAATTGACAATGTATAACAAAGCAACTCCTATTGTTGTGAAGAAATCTTATGATGACTCCAATGACGATGGTGATATGCCTTCGTCAGCAAAGTTGTTTCGGAATTCTAATGCCCAGGCATCTTGCGGTAACTATGATGACTCTGATGTGAAGAAGCCTATTTCAAAGGTTCAGAAAGAGCGGCAAAATGGTTCTAGTGCTAGCAATAAACATGAAAAGCCATCTACCCTGCTAGCTAAGAGACCAATAGATAACAATAATTCTATGCACACTTCAGTTAAGAAGTTAAAGGTCTCAGATCCAGCTGCATTGATCAAAACTAAACAAGTCTCTATGAAATGTGAGCCGAAAGTGGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAGTCACTCACATCAGCTGATAAATCATCTTCCATAAATAGGAAGTCGTCTATGTCAGCTGATAAATCATCTTCCATAAAGAACAGTTTGACAAAGGTTACCAAAGTTAACAACACTGGTAAAACATCTTTTAAGAAGCAGCCAAAGAAGTTAAAAAAATCAGGCAAGGGTTCAGATTATTCCAAATCTACGAAAATTCTTCCAAGTTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTGATTTTTCCTCCTCCTTACCAGCCCCATGGGGTAAAGATACTCTATAAGGGGAAACCGGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGGGATACAGAATACATGCAGAAAGATAAGTTCAAAGAAAATTTCTGGAATGACTGGCGTAAGTTGCTAGGAAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTTACCCCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAGAAACAAATGACTACAGAAGAGAAGAAGGCCCAGAAAGAGGAGAAAACGAAACAAGAGGAGAAATACATGTGGGCTATTGTCGATGGTGTTAAAGAGAAGGTTGGAAACTTTAGAGTTGAACCACCAGGATTGTTCCGAGGTCGTGGAGAGCATCCCAAGATGGGAAAATTGAAAAGACGCATTCGTCCAAGTGATATCGTAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCTTGGTGAAAGATGGAAAGAGATTAGACATGACAATACAGTTACATGGTTAGCCTACTGGAGTGACCCTATCAATCCCAAGTTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCCCTGAAGGGACAAAGCGACAAGGAAAAGTACGAGAAAGCTAGGATGTTGAAGGATTATATAGCAAACATTAGGGCTGCATACACGAAAGATTTTACAAATAAGGAGATTGCAAAGCAGCAAATAGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGCACATTAAAAGTAGAGAATGTAACGAGAGAAGCCCCCAACAAGTTGAAGTTCAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACTGTTGAGGTTGAGCTTCCTGTTTATAACGCAATTTTAAAGTTCCAAAAAGAAAAGCGCCCTGGTGATGATCTTTTTGACATGCTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCCGGCCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCTATCACGGTGGATGACATGCTGAATAAGGGAACTAAAGGTGGAGATGTTGGTGAAAAGATTGTTGTTTATCAGAGTGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCACAGTACACAAATGTCGAGGTTAACTGAAAAGATCGATGAACTTAAGGCTGTTCTGAAGGAGCTGAAAACGGATTTGGACAGGGCAAAGAAAGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGGCAAAACGGAACTTAAATCCTGAAGCGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACTAAAGACGACCTAAAGACTGTGGCATTAGGCACTTCCAAGATAAACTACCTTGATCCTAGGATTACAGTTTCCTGGTGTAAGCGGCATGAGGTCCCTATTGAAAAGATTTTCAACAAATCACTGCTGGCAAAATTTAGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA 2367 0.3912 MPLQASNKTILSLDFDDEDGPLTFKRYPSSNKKQLHSELTMYNKATPIVVKKSYDDSNDDGDMPSSAKLFRNSNAQASCGNYDDSDVKKPISKVQKERQNGSSASNKHEKPSTLLAKRPIDNNNSMHTSVKKLKVSDPAALIKTKQVSMKCEPKVDDDDDDIPISQRIKKSLTSADKSSSINRKSSMSADKSSSIKNSLTKVTKVNNTGKTSFKKQPKKLKKSGKGSDYSKSTKILPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKILYKGKPVDLTPEQEEVATMYAVMRDTEYMQKDKFKENFWNDWRKLLGRNHVIHNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKAQKEEKTKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPECPILGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIANIRAAYTKDFTNKEIAKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKEKRPGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITVDDMLNKGTKGGDVGEKIVVYQSANKQVAIICNHQRSVSKSHSTQMSRLTEKIDELKAVLKELKTDLDRAKKGKSPLKSSDGKAKRNLNPEALEKKISQTNAKIEKMQRDMKTKDDLKTVALGTSKINYLDPRITVSWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0037 788 MobiDBLite consensus disorder prediction 117 131 - -
Lan7g0037 788 Gene3D - 261 344 IPR013034 GO:0003917|GO:0006265
Lan7g0037 788 Coils Coil 664 691 - -
Lan7g0037 788 MobiDBLite consensus disorder prediction 96 110 - -
Lan7g0037 788 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 245 456 IPR008336 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 MobiDBLite consensus disorder prediction 688 709 - -
Lan7g0037 788 CDD Topoisomer_IB_N 245 457 - -
Lan7g0037 788 PRINTS Eukaryotic DNA topoisomerase I signature 385 394 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 PRINTS Eukaryotic DNA topoisomerase I signature 501 520 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 PRINTS Eukaryotic DNA topoisomerase I signature 524 538 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 PRINTS Eukaryotic DNA topoisomerase I signature 546 562 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 PRINTS Eukaryotic DNA topoisomerase I signature 604 618 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 PRINTS Eukaryotic DNA topoisomerase I signature 741 752 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 Gene3D DNA Topoisomerase I, domain 2 241 456 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan7g0037 788 PANTHER DNA TOPOISOMERASE I 16 788 - -
Lan7g0037 788 PANTHER DNA TOPOISOMERASE I 16 788 - -
Lan7g0037 788 SMART topeu 385 761 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan7g0037 788 Gene3D - 608 788 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan7g0037 788 MobiDBLite consensus disorder prediction 149 166 - -
Lan7g0037 788 Gene3D Topoisomerase I; Chain A, domain 3 459 607 IPR014711 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 MobiDBLite consensus disorder prediction 167 213 - -
Lan7g0037 788 Coils Coil 334 362 - -
Lan7g0037 788 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 734 752 IPR018521 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 Pfam Eukaryotic DNA topoisomerase I, catalytic core 459 684 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lan7g0037 788 MobiDBLite consensus disorder prediction 67 81 - -
Lan7g0037 788 Pfam C-terminal topoisomerase domain 720 788 IPR025834 -
Lan7g0037 788 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 240 457 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan7g0037 788 SUPERFAMILY DNA breaking-rejoining enzymes 459 785 IPR011010 GO:0003677
Lan7g0037 788 MobiDBLite consensus disorder prediction 52 242 - -
Lan7g0037 788 CDD Topo_IB_C 465 658 IPR013500 GO:0003677|GO:0003917|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0037 Lan-Chr7 183292 189941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0037 K03163 - gmx:100799837 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0037 7 183292 189941 Lan13g0073 13 404874 416209 LSH