Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0073 ATGGCTGTCGAGACTAACGATAAAACGAGTTTACCACATGATTTTGGTGATGACGACGGGCCTGTCACTTTTAAACGATACACGTCGTCCAAGAAAAAACAATTGCATTCAGAATTGACGAAGTCAACTTCTAATAGTCTTGATGGACAGTCAAATAGACAGAGTTCGAAAGTGCCTTCTTCAAATGGCCAATCTTCTATCACCCCGAAGGGTGATGTTGTCCCATCTGCTAAGGCATCAGTCATGAAATCTTCTGTAGGAAACACTAAAGCGTCCAATTCACTTGTCAATCCTGCATCTGTTAAGTTGCCTGTAGCAAATTCAAGATCACATTCACTAAATGATAAACCGAAGTCTGTTCCGGAACAAAAAGCGTCCATTAATATTAAGGGGGAAACAAAATTTATCAAACATTGTACTAAGGATTATGCTGAAGATTCAGAAGACGAGGAGGATAATAAACCATTAAGTGCTAGGTTGAAGGTGAATTCTAACAATGATAACAAAGCAACCCCGGTTGTTGTTAAGAAATCTTATCAAGACTCTGATGACGACGATGATATCCCTTTGTCTGCAAAATTATTCCGGAATTCTAATGTCGGAACATCTAGTGGTAACTATGATGACCCTGATGAGAAGAAGCTTATTTCAAAAGTTCAGAAAGAACGGCAAAATGGTTCTAGTGCTAGCATTAAACAGGAAAAACCATCTACAGTGCCAGCTAAGAGACCACTAGATAACAGTAATTCTGTGCACTCTCAAGCTAAGAAGTCCAAGGTCTCAGATCCAGCTGCATCAATCAAAACTAAACAAGTGTCTATGAAATGTGAGCCGAAGGTGGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAGTCAGCTACATCAGCTGATAAATCATCTTCCATAAATAAGAAGGCGGCTACATCAGCTGATAAATCATCTTCGATAAAGAAGAATTTGGCAAAGGTTACTAAAGTTAACAAGGCTGGTAAAACATCTTTTAAGAAACAGCCAAAGAAGTTAAAAAAATCAGGCAAGGGTTCAGATTATTCCAAATCTATGAAATTTCTTCCTGGTTCTGGCGATGGACAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTTCCTCCTCTTTACCAGCCCCATGGGATAAAGATGCTCTATAAGGGGAAACCGGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGATTACATGCAGAAAGATAAGTTCAAAGAGAATTTTTGGAATGACTGGCGTAAGTTGCTAGGAAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTCACTCCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAGAAACAAATTACTACAGAAGAGAAGAAGGCCCTGAAGGAGGAGAAAATGAAACAGGAGGAGAAATTCATGTGGGCTATTGTCGACGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCCAAGATGGGAAAATTGAAAAGACGCATTTGTCCAAGGGATATCGTCATTAATATTGGAAAGGATGCCCCGGTTCCTGAATGTCCTATTCCTGGTGAAAGATGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCGTACTGGAGCGACCCTATCAATCCAAAGTTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGACAAAGCGACAAGGAAAAGTACGAGAAAGCTAGGATGTTGAAGGATTATATAGAGAACATTAGGGCTGCATACACAAAAGATTTTACAAGTAAAGATATCACAAAGCAGCAGATAGCTGTTGCTACGTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGCACATTAAAAGTAGAGAATGTAACAAGAGAAGCCCCCAACAAGTTGAAGTTCAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTAAAGTTCCAAAAAGAAAAAGGCCCTGGTGATGATCTTTTTGACATGCTGGATACAAGTAAATTAAATGCACATCTGAAGGAACTCATGCCCGGCCTAACAGCAAAAGTCTTCCGTACATTTAATGCATCTATCACATTGGATGACATGCTGAATATGGGAACTAAAGGTGGAGATGTTGGAGAAAAGATTGTTGTTTATCAGCATGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACGCACTGTTTCAAAATCTCACAGTGCACAAATGTCGAAGTTAAATGAAAAGATTGATGAACTTAAGGCTGTTTTGAAGGAGCTGAAAACGGATTTGGACAGGGCAAAGAAGGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGACAAAACGGAACTTAAATCCTGAAGCACTAGAGAAAAAGATATCTCAAACCAATGCAAAAATCGAGAAAATGCAGCGTGATATGAAGACTAAAGAAGACCTAAAAACTGTGGCATTAGGCACGTCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCTTGGTGCAAGCGGCATGAGGTCCCTATTGAAAAGATTTTCAACAAATCACTGCTGGAAAAATTTAGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA 2742 0.392 MAVETNDKTSLPHDFGDDDGPVTFKRYTSSKKKQLHSELTKSTSNSLDGQSNRQSSKVPSSNGQSSITPKGDVVPSAKASVMKSSVGNTKASNSLVNPASVKLPVANSRSHSLNDKPKSVPEQKASINIKGETKFIKHCTKDYAEDSEDEEDNKPLSARLKVNSNNDNKATPVVVKKSYQDSDDDDDIPLSAKLFRNSNVGTSSGNYDDPDEKKLISKVQKERQNGSSASIKQEKPSTVPAKRPLDNSNSVHSQAKKSKVSDPAASIKTKQVSMKCEPKVDDDDDDIPISQRIKKSATSADKSSSINKKAATSADKSSSIKKNLAKVTKVNKAGKTSFKKQPKKLKKSGKGSDYSKSMKFLPGSGDGQKKWTTLVHNGVIFPPLYQPHGIKMLYKGKPVDLTPEQEEVATMYAVMRDTDYMQKDKFKENFWNDWRKLLGRNHVIHNLKDCDFTPIYDWYQSEKEKKKQITTEEKKALKEEKMKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPRDIVINIGKDAPVPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKEKGPGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNMGTKGGDVGEKIVVYQHANKQVAIICNHQRTVSKSHSAQMSKLNEKIDELKAVLKELKTDLDRAKKGKSPLKSSDGKTKRNLNPEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLEKFSWAMDVDPDFRF* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0073 913 Gene3D Topoisomerase I; Chain A, domain 3 584 732 IPR014711 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 MobiDBLite consensus disorder prediction 1 131 - -
Lan13g0073 913 MobiDBLite consensus disorder prediction 158 175 - -
Lan13g0073 913 CDD Topoisomer_IB_N 370 582 - -
Lan13g0073 913 SMART topeu 510 886 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan13g0073 913 MobiDBLite consensus disorder prediction 813 833 - -
Lan13g0073 913 Coils Coil 840 860 - -
Lan13g0073 913 MobiDBLite consensus disorder prediction 10 38 - -
Lan13g0073 913 Gene3D - 386 469 IPR013034 GO:0003917|GO:0006265
Lan13g0073 913 MobiDBLite consensus disorder prediction 221 235 - -
Lan13g0073 913 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 368 583 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan13g0073 913 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 370 581 IPR008336 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 PANTHER DNA TOPOISOMERASE I 115 913 - -
Lan13g0073 913 Pfam Eukaryotic DNA topoisomerase I, catalytic core 584 809 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 Gene3D DNA Topoisomerase I, domain 2 366 581 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan13g0073 913 PANTHER DNA TOPOISOMERASE I 115 913 - -
Lan13g0073 913 MobiDBLite consensus disorder prediction 242 268 - -
Lan13g0073 913 Coils Coil 782 816 - -
Lan13g0073 913 PRINTS Eukaryotic DNA topoisomerase I signature 510 519 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 PRINTS Eukaryotic DNA topoisomerase I signature 626 645 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 PRINTS Eukaryotic DNA topoisomerase I signature 649 663 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 PRINTS Eukaryotic DNA topoisomerase I signature 671 687 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 PRINTS Eukaryotic DNA topoisomerase I signature 729 743 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 PRINTS Eukaryotic DNA topoisomerase I signature 866 877 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 CDD Topo_IB_C 590 783 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 Coils Coil 460 487 - -
Lan13g0073 913 Pfam C-terminal topoisomerase domain 845 913 IPR025834 -
Lan13g0073 913 Gene3D - 733 913 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lan13g0073 913 SUPERFAMILY DNA breaking-rejoining enzymes 584 910 IPR011010 GO:0003677
Lan13g0073 913 MobiDBLite consensus disorder prediction 39 71 - -
Lan13g0073 913 MobiDBLite consensus disorder prediction 292 325 - -
Lan13g0073 913 MobiDBLite consensus disorder prediction 274 291 - -
Lan13g0073 913 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 859 877 IPR018521 GO:0003677|GO:0003917|GO:0006265
Lan13g0073 913 MobiDBLite consensus disorder prediction 143 357 - -
Lan13g0073 913 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0073 Lan-Chr13 404874 416209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0073 K03163 - gmx:100799837 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0037 7 183292 189941 Lan13g0073 13 404874 416209 LSH