Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0022 ATGGATGGGTATGAAGCCACTAGGACTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCATCAAAAATCATGGGCATGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATAAGACTGGCATTTGGCCCGGAAGCCCTAGTTCATTCAGTGATTGTTAAAGCTAGGAAGGACTTAGGATTACGCTCTAACTCTCCACCTTCACCTCCTACTCCTCCATCATCATCATCATCAGCATCATCTCCATTTCTTTCAAGGCAAAGTTCCATAACTTCTGCTTCTAGGCTCGGTGGGATTAAACTTCCACCTGCTTTAACTATTCCAAACTCAACATCTTCTAACTCACCTTCTTGGACTACTATGTCTGACCTTAACAACCCTGATGAGTTAATCATGAGTCCTAATAATCCAAACTCATTATTATCATCTTCCTTACCCTTTTATCATCATGCAAATGGAGGAGTGTCAGATCCAATTGACGAGTCCCAACTTCAAGACCAGCTTTCTTTCTTGAATGATGGCTCTCCTCACAAGAACCAAGATTTGTTTTACCCTCATCACTCTGACTTGTCATCAAGTCCAACTGGGGGTGCTGCTGACCCTAATCTTTTCCCTTCATATGGTTGGGGAGGGTCTCTTCATAGAAGGAGTTGTTCTGTTAATGATGCTTGTTTGGGGTCTGAGGATCCTAATTCAGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAAAATGGTACTACTTGTAGGTTCCTTCATGGAGGAGGAGGAACACTCGGAGATGCTGATGCTGCAATGGTTGGTTCCCCTAGTAAGATTGAGATGATGGATGAGCTTCTCAGATCTAAGACTGCTCAACAGCAAAGACTTGCTGCTGCTTCTCAACTCATGGCTTCTTCTTTTCCGTACTCACCAAAGGGCATGAATTTCCTATTACAGCACCAACAAAATGATTCTCCAAGAGGGGCAGTTGCAGCTCTTATGATGAATGAAGAGTTGCACAAGTTTGGAAGATCCAGGCTTGAAAGGAATGATTTTTCTTTGAACAGTACTGGGATAGTTAATCCAGCATCAAGACAGATCTACTTGACTTTTCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAGGATGTGAGGATTCCATACCAGCAGAAGCGAATGTTTGGATTTGTTACCTTTGTTTATCCTGAGACAGTGAAGCTCATTCTATCCAAAGGGAACCCTCATTTTGTATGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACAGGAAGCAACAGCAACAACTAGATAGGGGAGACTTTTCACCTTGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTCCAACTAGGAGGCAGAATGTTTTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAAGAGCAAGCTGATTTTCAGCAAGCTCTTGAGCTCCAAAGTAGAAGGTTAATGGGTCTGCAACTTCTTGACTTCAAGAAGCAACACCACCGTGCACTTTCAACCGGAAGTCCAATTCCTTCCCCTACTCACTCTCCTAGTATGTTCAATCAAAACATTGTTTTTCCTCCGTTTCACAGCAGCTCAGAGACCCCACAGGATAATGGTTCTAGTTCAGCTCCAGCTAGTAGTACGGTATCAGTGAACACTTTTATCGGCAAGGAGGTGGTTGGTAATGGGGAGAATGGATATAATGATGGCAATGGCAAAAGCTCAAGTCATGAAGAGTGTGATTTGCATGAATGTTTGGAGCATAATCTCCCAGATAGCCCTTTTGCTTCCCCTACTAAAGCTGCTGCTGGTAATGACTACATGGCTGCCTTCTCCAATGGACCTAATGAGGCCATTCATTCAGATGCCTTGGCTGCATCTGCCAACTCTAAATTTGGTACCAGCACATTACTTCCATCACCATCTGCTCTGGACATGGCCTCTTTCAAATCCTTTAATTGCCAAATTCCAAGGTTCTCTTCTGGACCTGGAACTATTGGCATGGTATCCGGTACTGGCGGACCGATTGGTATTTAA 2115 0.4359 MDGYEATRTVFSRIQNLDPENASKIMGMLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLRSNSPPSPPTPPSSSSSASSPFLSRQSSITSASRLGGIKLPPALTIPNSTSSNSPSWTTMSDLNNPDELIMSPNNPNSLLSSSLPFYHHANGGVSDPIDESQLQDQLSFLNDGSPHKNQDLFYPHHSDLSSSPTGGAADPNLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGFGWKPCLYFARGYCKNGTTCRFLHGGGGTLGDADAAMVGSPSKIEMMDELLRSKTAQQQRLAAASQLMASSFPYSPKGMNFLLQHQQNDSPRGAVAALMMNEELHKFGRSRLERNDFSLNSTGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQLDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADFQQALELQSRRLMGLQLLDFKKQHHRALSTGSPIPSPTHSPSMFNQNIVFPPFHSSSETPQDNGSSSAPASSTVSVNTFIGKEVVGNGENGYNDGNGKSSSHEECDLHECLEHNLPDSPFASPTKAAAGNDYMAAFSNGPNEAIHSDALAASANSKFGTSTLLPSPSALDMASFKSFNCQIPRFSSGPGTIGMVSGTGGPIGI* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0022 704 MobiDBLite consensus disorder prediction 103 138 - -
Lan7g0022 704 SMART rrm1_1 366 436 IPR000504 GO:0003723
Lan7g0022 704 CDD RRM_AtC3H46_like 367 436 IPR034365 -
Lan7g0022 704 MobiDBLite consensus disorder prediction 107 138 - -
Lan7g0022 704 Gene3D - 364 461 IPR012677 -
Lan7g0022 704 SUPERFAMILY CCCH zinc finger 238 260 IPR036855 GO:0046872
Lan7g0022 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 422 IPR000504 GO:0003723
Lan7g0022 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 689 - -
Lan7g0022 704 ProSiteProfiles Zinc finger C3H1-type profile. 235 262 IPR000571 GO:0046872
Lan7g0022 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 441 IPR000504 GO:0003723
Lan7g0022 704 Gene3D - 229 297 - -
Lan7g0022 704 SUPERFAMILY RNA-binding domain, RBD 377 459 IPR035979 GO:0003676
Lan7g0022 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 689 - -
Lan7g0022 704 SMART c3hfinal6 237 261 IPR000571 GO:0046872
Lan7g0022 704 MobiDBLite consensus disorder prediction 61 89 - -
Lan7g0022 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 260 IPR000571 GO:0046872
Lan7g0022 704 MobiDBLite consensus disorder prediction 549 574 - -
Lan7g0022 704 MobiDBLite consensus disorder prediction 445 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0022 Lan-Chr7 115001 119215 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0022 - - gmx:100801341 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0022 7 115001 119215 Lan13g0056 13 302433 306752 LSH