Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0056 ATGGATGGTTATGAAGCTACTAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCATCAAAAATCATGGGTATACTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGGCTAGCATTTGGTCCAGAAGCCCTAGTTCATTCAGTGATTGTTAAAGCTAGAAAGGACTTAGGATTACCCTCTAACTCTCCACCTACACCTTCTACTCCTCCTTCACCATCTCCATTCCTTCCAAGGCAAAGTTCCATAACTTCAGCTTCTAGGCTCAGTGGAGTTATTAACCTTCCTCCTCCAGCTTTAACTATTCCAAACACAACCACTTCTAACTCACCTTCTTGGGCTACTATTTCTGAGCTTAACAACAACCAAGATGAGTTAATCATGAGTCCTAATAATTTGGTTGTTGGGTCTAATAGCACTTCTTCTTCATCTTCCTTACCCTTTTATCATCATCATCATGCAAATGGAGGAGTTTCAGATCCAATTGATGAGTTACAACTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTCACAATAACCAAGATTTATTCTACCCTCATCAGTCTGACTTGTCTTTAAGTCCAACTAGTGGTGCTGACCCTAGTAATATTTTCCCTTCATATGCTTGGGGAGGGTCTCTTCATAGAAGGAGTTGTTCTGTGAATGATGCTTGTTTGGGTTCTGAGGACTCTAATTCAGGATTTGGTTGGAAGCCTTGTCTTTACTTTGCAAGAGGGTACTGCAAAAATGGTACTAGTTGTAGGTTCCTTCATGGAGGAGGAGGAGTTATTGGAGATGCTGATGCTGCTGCAATGGTTGGTTCTCCTAGTAAGATTGATATGATGGATGAGCTTCTCAGATCCAAGACTGCACAACAGCAAAGACTTTCTGCTGCTTCTCAACTCATGGCATCTTCTTTTCCATACTCACCAAAGTGCATGAATTTTCTATTACAGCAGCAACAAAATGAGTCTCCAAGAGGGGCAGTTGCAGCTCTTATGATGAATGAAGAGTTGCACAAGTTTGGAAGATCAAGGCTTGAAAGGAATGATTTTTCTTTGAATAGTCCTGGAATTGTTAACCCAGCTTCAAGGCAGATCTACTTGACTTTTCCAGCAGATAGCACTTTTAGAGAGGAAGATGTTTCCAATTACTTCAGCATTTATGGTCCTGTTCAGGATGTGAGGATCCCCTACCAGCAGAAGCGTATGTTTGGGTTTGTTACCTTTGTTTATCCTGAGACTGTGAAGCTCATTCTATCTAAAGGGAACCCTCATTTTGTGTGTGATGCTAGAGTCCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCAGACAAGTACATGAAGCAACAAGTAGATAGAGGAGATTTTTCACCTTGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTCCAACTTGGTGGAGGCAGAATGTTTTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAAGAGCAAGCTGATTTTCAGCAAGCTCTTGAGCTCCAAAGTAGAAGGTTAATGAGTCTGCAACTTCTTGACATCAAGAAGCAACACCACCGTACACTTTCAACCGGAAGTCCGATTCCATCCCCTACTCATTCTCCTAGTATGTTCAATCAAAACCTTGTTTTTCCTTCGTTTCAAGGCAGCTCGGAGACTCCGAAAGATAATGGTTCTAGTTCAGCTCCAGTAGGTAGTACTGTATCAGTGAACACTTGTATTGGCAAGGAAGTTGTTGGTAATGGGGAGAATGGATATAAATATAATGATGGCAATGGCAATGGGAAGAGCTCAAGTCATGAAGAGTGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCTCCTACTAAAGCTGCTACTGGTGATGACTACATGGCTGCATTCTCCAATGGACCTAATGAGGCCATTGTTTCTGATGCTTCAGCTGCATCTGCCAACTCTAAATTTGGTACTAGCACATTACTTCCATCACCATCTGCTTTGGACATGGCCTCTTTCAAATCCTTTAATTGCCAAATCCCAAGGTTCTCTTCTGGCCATGGAACTATTGGCATGTTCGCGGGCACGGGCGGACCAATTGGCATTTAG 2142 0.4216 MDGYEATRIVFSRIQNLDPENASKIMGILLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLPSNSPPTPSTPPSPSPFLPRQSSITSASRLSGVINLPPPALTIPNTTTSNSPSWATISELNNNQDELIMSPNNLVVGSNSTSSSSSLPFYHHHHANGGVSDPIDELQLQDQLSFLNDGSPHNNQDLFYPHQSDLSLSPTSGADPSNIFPSYAWGGSLHRRSCSVNDACLGSEDSNSGFGWKPCLYFARGYCKNGTSCRFLHGGGGVIGDADAAAMVGSPSKIDMMDELLRSKTAQQQRLSAASQLMASSFPYSPKCMNFLLQQQQNESPRGAVAALMMNEELHKFGRSRLERNDFSLNSPGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYMKQQVDRGDFSPCGTPTGLDARDQFDLQLGGGRMFYNTQDMLWRRKLEEQADFQQALELQSRRLMSLQLLDIKKQHHRTLSTGSPIPSPTHSPSMFNQNLVFPSFQGSSETPKDNGSSSAPVGSTVSVNTCIGKEVVGNGENGYKYNDGNGNGKSSSHEECDLQECLEHNLPDSPFASPTKAATGDDYMAAFSNGPNEAIVSDASAASANSKFGTSTLLPSPSALDMASFKSFNCQIPRFSSGHGTIGMFAGTGGPIGI* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0056 713 MobiDBLite consensus disorder prediction 61 85 - -
Lan13g0056 713 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 265 IPR000571 GO:0046872
Lan13g0056 713 SUPERFAMILY CCCH zinc finger 243 265 IPR036855 GO:0046872
Lan13g0056 713 SMART c3hfinal6 242 266 IPR000571 GO:0046872
Lan13g0056 713 MobiDBLite consensus disorder prediction 532 579 - -
Lan13g0056 713 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 701 - -
Lan13g0056 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 428 IPR000504 GO:0003723
Lan13g0056 713 ProSiteProfiles Zinc finger C3H1-type profile. 240 267 IPR000571 GO:0046872
Lan13g0056 713 SMART rrm1_1 372 442 IPR000504 GO:0003723
Lan13g0056 713 MobiDBLite consensus disorder prediction 533 579 - -
Lan13g0056 713 Gene3D - 376 449 IPR012677 -
Lan13g0056 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 447 IPR000504 GO:0003723
Lan13g0056 713 MobiDBLite consensus disorder prediction 67 81 - -
Lan13g0056 713 CDD RRM_AtC3H46_like 373 442 IPR034365 -
Lan13g0056 713 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 701 - -
Lan13g0056 713 Gene3D - 233 331 - -
Lan13g0056 713 SUPERFAMILY RNA-binding domain, RBD 383 459 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0056 Lan-Chr13 302433 306752 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0056 - - gmx:100801341 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0022 7 115001 119215 Lan13g0056 13 302433 306752 LSH