Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2138 ATGTCGGACAATGAGAGTTGTTCCACCCAGCTTATTGATGGAGATGGTACATTCAATGCTTCTGGGATTGAAAAGTTCATGAAGGAGGTTAAATTAGCAGAATGTGGACTTTCCTATGCTGTTGTTTCAATTATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAATAGTTTGTTTCATACCAACTTCAGAGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCCAATTGTACTGGTATAGAGCCTTGTACGCTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGGGGAGAGGATGATACTGCATTTGAGAAGCAGAGTGCTCTTTTTGCCTTGGCTGTTTCTGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGACGTGAGCAAGCTGCAAATAAGCCACTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGAAAAACAACACTTTTGTTTGTTATACGCGATAAAACAAAGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATCCAGAGAATATGGGACTCTGTTCCTAAACCACAGGCTCACACAGAAACTCCACTAAGTGAATTTTTCAATGTTGAAGTTGTTGCACTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCCAGCTTGAGGCAACGATTCTATCATTCTATTGCTCCTGGTGGGCTTGCGGGGGATCGACGCGGGGTAGTTCCCGCTTCAGGCTTCTCTTTCAGTGCTCAGCAAATCTGGAAAGTCATTAAGGAGAACAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTAAGATGTGAAGAAATTGCCAATGAGAAATATACCCTTTTTGCCGCAAATAAGGACTGGTGTCAGCTGGAAGAGGCTGTGAAATCTGGCCCTGTTCCTGGATTTGGGAAAAAACTCAACTCGCTCCTTGATACATGTCTTTCAGAGTATGATGTTGAAGCCAATTATTTTGATGAAGGTGTGAGATCTGCAAAACAAAATCAGCTTCAAGAAAAATTGTTCCAACTTGCCCAACCATCATTCCTAGCTGTGCTGGGACATATAAGGTCTGCAACTTTTGATAAGTTCAAGGAAGCATTTGACAAGGCTTTGAATGGGGAGGAAGCATTTTCTGCTGCTGCAAATAGTTGCATAGGGTTATATATGACTCAATTTGATGAAGGGTGCGCAGATATTATTATTGAAGTAGCAAACTGGGATACATCTAAAGTAAGGGAGAAACTACAGCGTGATATCGATGCACATGTTGCATCTGTACATTCAGCTAAGATGTCAGAACTTACCTCATCATATGAGGAAAAACTGAAGGTGGCCTTGTCTGGACCTGTTGAAGCTCTTTTGGATGAAGCCAATGGTGATACTTGGCCATCAATAAGGAGCCTTCTCAGCCGTGAGACTAAATCAGCTATTTATGGGTTTTCTGCTGAGCTTACCAGATTTGATATGGATGAACAAACAAGGAAAAACTTGACAGTAAGTTTAGAGGATTATGCAAGGGGTGTGATAGAAGCAAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTACAACAGTATTTGGTCGTGATTCTGATTCAATGCCTCGTGTTTGGACGGGAAAAGAAGATATTCGAGCCATCACCAAGACTGCCCGAATTGAATCCTTGAAGCTGCTATCTGTTATGGCTGTAATTCGTTTAGATGATGATGATACTGATAATGTCGAGAAAACATTAGCAGTTGTGTTGGTGGATTCATCAAGCAGTTCTGCTAAAAATAGAAGCATTGCAGAAGTCGATCCACTGGCTTCAAGCACTTGGGAGAAGGTTCCATCTTCTAAAACATTGATCACGCCTGTCCAGTGCAAATCTTTGTGGAGGCAATTTAAGATGGAGACAGAATATAGTGTCTCTCAGGCCGTTTCTGCACAGGCAGCGAACAAACGCAGTAACCACTGGTTACCTCCGCCATGGGCAATTGTAGCTTTACTTATTCTTGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGTTTGTCATCTTTATTGGTTTTCTTCTCATTAAAGCCCTATGGGTGCAACTTGACATTAGGAGTGAATTTCGCAATGGAGCTCTTCCGGGAATCATATCTTTGTCTAGCAAGTTTGTTCCAACTATTATGAACATTATGAAAAAACTAGCAGAGCAAGGAGAGAGTCCAGCAACTAACACTTCTCAGAGAATTCAATCAAGAAGCAATCACAATCCTGATACTGCTGATAGTGCAATGTCATCTACTGCTTCTTCATCTGATATAACTTCATTCAACAATAATGCAGAATACACCAGTCCATCCAAGTATGATTAG 2436 0.4113 MSDNESCSTQLIDGDGTFNASGIEKFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNSLFHTNFREMDAFKGRSQTTKGIWMANCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQRIWDSVPKPQAHTETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYTLFAANKDWCQLEEAVKSGPVPGFGKKLNSLLDTCLSEYDVEANYFDEGVRSAKQNQLQEKLFQLAQPSFLAVLGHIRSATFDKFKEAFDKALNGEEAFSAAANSCIGLYMTQFDEGCADIIIEVANWDTSKVREKLQRDIDAHVASVHSAKMSELTSSYEEKLKVALSGPVEALLDEANGDTWPSIRSLLSRETKSAIYGFSAELTRFDMDEQTRKNLTVSLEDYARGVIEAKAREEAGRVLIRMKDRFTTVFGRDSDSMPRVWTGKEDIRAITKTARIESLKLLSVMAVIRLDDDDTDNVEKTLAVVLVDSSSSSAKNRSIAEVDPLASSTWEKVPSSKTLITPVQCKSLWRQFKMETEYSVSQAVSAQAANKRSNHWLPPPWAIVALLILGFNEFMTLLRNPLYLFVIFIGFLLIKALWVQLDIRSEFRNGALPGIISLSSKFVPTIMNIMKKLAEQGESPATNTSQRIQSRSNHNPDTADSAMSSTASSSDITSFNNNAEYTSPSKYD* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2138 811 PANTHER PROTEIN SEY1 6 809 IPR008803 -
Lan6g2138 811 CDD GBP 35 241 - -
Lan6g2138 811 Pfam Sey1 three-helix bundle domain 322 759 IPR046758 -
Lan6g2138 811 MobiDBLite consensus disorder prediction 759 811 - -
Lan6g2138 811 Hamap Protein SEY1 [SEY1]. 8 761 IPR008803 -
Lan6g2138 811 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 45 280 - -
Lan6g2138 811 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 36 251 IPR030386 GO:0005525
Lan6g2138 811 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 6 809 - -
Lan6g2138 811 Gene3D - 13 251 IPR027417 -
Lan6g2138 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 276 IPR027417 -
Lan6g2138 811 Coils Coil 217 237 - -
Lan6g2138 811 MobiDBLite consensus disorder prediction 760 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2138 Lan-Chr6 31849273 31858015 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2138 K22698 - gmx:100777656 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2138 6 31849273 31858015 Lan5g0621 5 12733037 12743315 PCT
Lan6g2138 6 31849273 31858015 Lan9g0636 9 9370433 9380905 PCT
Lan5g0621 5 12733037 12743315 Lan6g2138 6 31849273 31858015 PCT
Lan9g0636 9 9370433 9380905 Lan6g2138 6 31849273 31858015 PCT