Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0621 ATGGCGAGTAGTGATAGTAGTTGCTCGACTCAGCTTCTTGATGGGGATGGTGTATTCAATGTTGCCGGGATTGAAACTTTTATGAAAGAAGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATTATGGGTCCACAAAGTAGCGGCAAGAGCACACTATTAAATCATTTATTTGGTACCAACTTTCGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGGCATCGAGCCTTGTACACTGGTGATGGATTTGGAGGGTACCGATGGAAGAGAACGTGGAGAGGACGATACTGCATTCGAAAAGCAGAGTGCTTTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACTGTCTTTCAGGTTATGATGAGATTGTTTAGTCCACGGAAAACAACGATGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCTCACATGCAAACCCCACTTAGTGAATTTTTCAATGTTGAAGTTGTCGCTCTTTCTAGTTATGAAGAAAAGGAAGAACAATTTAAAGAGCAGGTGGCTAGCTTGAGGCAACGATTCCATCATTCCATTGCTCCTGGTGGGCTTGCTGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCATTTAGTTCTCAGGAGATATGGAGAGTCATCAAGGAGAACAAAGACCTCGATCTTCCTGCTCATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATTGCCCATGAAAAATATGCCGCTTTTGCTGCAAACGAGGAGTGGTGTCAATTGGAAGAAGCTGTGCAATCTGGTGAAATTACGGGATTTGGGAAAAAGCTCAATTCACTACTTGATGTGTATTTGTCAGAGTATGACGCTGAAGCGATTTATTTTGATGAAGGTGTTAGATCTGCTAAACAAAAACAACTTCAAGACAAATTGTTGCAACTTGTTCAACCTGCATTCCAATCTGCACTAGGACATGTAAGGTCTGGAACTTTGGATAAATTCAAGGAGACATTTGAGAAGGCTTTAAAAGGAGGGGAAGGGTTTTCCGAAGCTGCTAATAATTCCATCGGGTCTTGTATGGCTCAATTTGATAAAGCATGTGCAGATGTTGTTATTGAACAAGCAAACTGGGATGCATCTAAAGTAAGGGAGAAACTGCAGCGTGATATTGATGCACATGTTGCATCTGTACGTGCAGAAAAAATTTCGGAACTTACTTCAACATATGAGGAAAAACTGAAAGAATCCTTGTCTGGACCTGTTGAAGCTCTTTTGGATGGAGCTAGTAGTGAAACTTGGCCATCAATAAGGAACCTTCTAAGGCGTGAGACTGAATCAGCTGTTTCGGGGTTCTCTAGTGCACTTTCTGGGTTTGATATGGATGAAGACACTAGACATAAAATGATTTTGAGTATAGAGGATTATGCAAGGGGTGTGGTAGAAGGAAAGGCTAGGGAAGAGGCTGGAAGAGTTCTAATCCGTATGAAAGATAGGTTTACAATGTTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGAGCCATCACCAAGACTGCTCGCTCAGCTTCTTTGAAGTTGCTATCTGTTATGGCTGCAATTCGTTTGGACGATGACGCTGATAGTATTGAGAAAACATTAGTAGTTGCATTGGTTGATTCATCAAACAATGCTGCTAATAGGGGCATCACACTGGTTGACCCGCTAGCTTCTAGCAGCTGGGAACAGGTTCCATCCTCTAATACATTGATCACACCTGTCCAGTGCAAATCTTTGTGGAGACAATTCAAGACCGAGACAGAGTACAGTGTCTCACAGGCCATTTCTGCACAGGAGGCCAACAAGCGTAATAACAATTGGTTACCTCCTCCATGGGCAATAGCTGCTTTGGTTATTCTCGGATTTAATGAATTTATGACACTTCTAAGAAATCCCCTGTATTTGGGTGTCATCTTTGTTGGGTATCTTCTCGTTAAAGCCCTGTGGATGCAGCTTGACATTTCGGGTGAATTCCGCAATGGAGCTCTTCCTGGAATCATATCCTTGTCTAGCAAATTTATTCCAACTATCATGAACCTTATCAAAAGACTAGCCGAAGAAGGACAGAACCCTGCAAATAACAATCCTCCAAGAAACCAATCGAAAAATAATCATAACGCTCTTACAGATGGTGCTGCTTCGACTAGTGCTTCATCTAATGTAACTTCATTGGACAATGAAAGGGAATATACTAGCCCATCAAAACATGAGTAG 2427 0.4207 MASSDSSCSTQLLDGDGVFNVAGIETFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMQTPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSSQEIWRVIKENKDLDLPAHKVMVATVRCEEIAHEKYAAFAANEEWCQLEEAVQSGEITGFGKKLNSLLDVYLSEYDAEAIYFDEGVRSAKQKQLQDKLLQLVQPAFQSALGHVRSGTLDKFKETFEKALKGGEGFSEAANNSIGSCMAQFDKACADVVIEQANWDASKVREKLQRDIDAHVASVRAEKISELTSTYEEKLKESLSGPVEALLDGASSETWPSIRNLLRRETESAVSGFSSALSGFDMDEDTRHKMILSIEDYARGVVEGKAREEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDDADSIEKTLVVALVDSSNNAANRGITLVDPLASSSWEQVPSSNTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIAALVILGFNEFMTLLRNPLYLGVIFVGYLLVKALWMQLDISGEFRNGALPGIISLSSKFIPTIMNLIKRLAEEGQNPANNNPPRNQSKNNHNALTDGAASTSASSNVTSLDNEREYTSPSKHE* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0621 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lan5g0621 808 Gene3D - 23 245 IPR027417 -
Lan5g0621 808 MobiDBLite consensus disorder prediction 759 799 - -
Lan5g0621 808 CDD GBP 36 239 - -
Lan5g0621 808 Coils Coil 218 238 - -
Lan5g0621 808 Hamap Protein SEY1 [SEY1]. 9 760 IPR008803 -
Lan5g0621 808 Pfam Sey1 three-helix bundle domain 323 758 IPR046758 -
Lan5g0621 808 PANTHER PROTEIN SEY1 4 806 IPR008803 -
Lan5g0621 808 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 4 806 - -
Lan5g0621 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lan5g0621 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 245 IPR027417 -
Lan5g0621 808 MobiDBLite consensus disorder prediction 759 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0621 Lan-Chr5 12733037 12743315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0621 K22698 - gmx:100777656 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0621 5 12733037 12743315 Lan9g0636 9 9370433 9380905 LSH
Lan6g2138 6 31849273 31858015 Lan5g0621 5 12733037 12743315 PCT
Lan5g0621 5 12733037 12743315 Lan6g2138 6 31849273 31858015 PCT