Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2122 ATGAGATTCCTTAGAACAATCTTCACCCACCACAAGCACCACTACCATCTCTTAAACCCCAAATCCATTTCTTCATCTCCCATTTCCCTTCACCCACAACAAACTCCACAAACTCAACCCAATGACACTAACAACACCACAACAACAAGTAGTAGTAGTGATAGTAGCAATAGTTGGAGCAATTACACCAATGTAATAGAAACCTCACTGAAGGGTACAACTGGAAGAAACCCAATTGGGGGAACAAAGAAAAAAGATAAAGTTCAATGGGTATGCTCTGACTGTGGATTTTCAACTGCGAAATGGTGGGGCACGTGCCCCTCGTGTGAGGTAACTGGCACAATGAAGGAATTTCATGAAGCTAAATCAAGTGATGGTGCTGATAACAAAGTCAAGGGTGGGTTGGTCATTTCTGAAGATGCTGTAGGGTTGTGGCTTCCACATAAAGCAAATCAATTGTTTCCTGTGAAATTGGAGGAGGTTAACCGTGGATTTAATCATCAACATTGGAGAATTCCTTTGTCTGGTTCTTTTGGAAATGAAGTTTCTACAGTGCTTGGTGGTGGTATTGTACCAGGCTCTTTGACTTTGATTGGCGGCGATCCTGGTGTTGGTAAGAGTACTCTAGTATTGCAGATTGCGGCATTGATAGCAGGACACACTGATGGTGCAACTTCTCCAGTAGTATATGTCTCTGGTGAAGAGAGCCTTGAGCAAATTGGTAACAGAGCAGATCGCCTTGGGATTAAATCAGATATTTATTTATATTCAAGTACTGATATTGAGGATATATTGAAGAAAGCTCAAGTTGTCTCCCCTCGTGCTCTAGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATATTAGGAAGTGCTGGAGGGATTACACAGGTGAAGGAATGTACCTCGGCTTTGATGCGATTTGCAAAAACAACTAACATCCCAGTTTTTTTGATAGGACATGTGACAAAATCTGGAGACATAGCAGGACCACGTGTGTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGTGAAAAGTGCTCTTCCTATCGCATGCTTCGTGCTGTGAAAAATCGATTCGGATCCGCTGATGAGCTCGGAGTTTTTGAGATGTCACAATCAGGACTCCAGTCTGTTTCAAATGCCAGTGAAATATTCCTCAGTGAGCCATGCTCTGATTCACAATTTTTAGCTGGACTAGCTATTACTGTAATAATGGATGGTTCAAGAACTTTTGTGATTGAAATTCAGGCACTGTGCCTTTCAAATTGCCCTGTGCCAGTTTCATCTTCAGGGCTAATTAATGGGATCCCAGCAAGTAGAGCTAATATGGTTAAATGTGTCCTTGTTAAACAAGCTGGTCTTCAACTCCAAGAAAATGCTGTATTTTTAAATGTTGTTAGTGGATTGATAGTGGAAGAGACTGCTGGAGATCTTGCAATAGCAGCCGCAATTTGCAGCAGTTTTTTAGAGTTCCCTATTCCGAAGGGCATTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGAGAAAAGGGTATACACAGTGGCTAAGCTGGGTTACACAATGTGTATTGTACCAAAGCAAGCAGAAAAAGTTTTAGAAGCAGAAAGTCTAGGAAAGACAAAAGTTGTAGGATGCAATAATCTGAAAGAGGTTATTAATGTTGTATTCCGTAAGAGATAA 1716 0.4103 MRFLRTIFTHHKHHYHLLNPKSISSSPISLHPQQTPQTQPNDTNNTTTTSSSSDSSNSWSNYTNVIETSLKGTTGRNPIGGTKKKDKVQWVCSDCGFSTAKWWGTCPSCEVTGTMKEFHEAKSSDGADNKVKGGLVISEDAVGLWLPHKANQLFPVKLEEVNRGFNHQHWRIPLSGSFGNEVSTVLGGGIVPGSLTLIGGDPGVGKSTLVLQIAALIAGHTDGATSPVVYVSGEESLEQIGNRADRLGIKSDIYLYSSTDIEDILKKAQVVSPRALVVDSIQTVYLKGILGSAGGITQVKECTSALMRFAKTTNIPVFLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKCSSYRMLRAVKNRFGSADELGVFEMSQSGLQSVSNASEIFLSEPCSDSQFLAGLAITVIMDGSRTFVIEIQALCLSNCPVPVSSSGLINGIPASRANMVKCVLVKQAGLQLQENAVFLNVVSGLIVEETAGDLAIAAAICSSFLEFPIPKGIAFIGEIGLGGELRMVPRIEKRVYTVAKLGYTMCIVPKQAEKVLEAESLGKTKVVGCNNLKEVINVVFRKR* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2122 571 PANTHER DNA REPAIR PROTEIN RADA 1 570 - -
Lan6g2122 571 Pfam Rubredoxin metal binding domain 90 117 IPR041166 -
Lan6g2122 571 ProSiteProfiles RecA family profile 1. 171 323 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lan6g2122 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 374 IPR027417 -
Lan6g2122 571 PRINTS DNA repair protein radA signature 92 116 - -
Lan6g2122 571 PRINTS DNA repair protein radA signature 184 212 - -
Lan6g2122 571 PRINTS DNA repair protein radA signature 279 303 - -
Lan6g2122 571 PRINTS DNA repair protein radA signature 318 346 - -
Lan6g2122 571 PRINTS DNA repair protein radA signature 353 379 - -
Lan6g2122 571 PRINTS DNA repair protein radA signature 432 455 - -
Lan6g2122 571 SUPERFAMILY Ribosomal protein S5 domain 2-like 360 568 IPR020568 -
Lan6g2122 571 MobiDBLite consensus disorder prediction 22 60 - -
Lan6g2122 571 Gene3D - 181 379 IPR027417 -
Lan6g2122 571 TIGRFAM sms: DNA repair protein RadA 85 562 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lan6g2122 571 Gene3D - 399 571 IPR014721 -
Lan6g2122 571 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 570 - -
Lan6g2122 571 SMART AAA_5 192 349 IPR003593 -
Lan6g2122 571 Pfam AAA domain 184 327 - -
Lan6g2122 571 Pfam Subunit ChlI of Mg-chelatase 453 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2122 Lan-Chr6 31728363 31736850 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2122 K04485 - gmx:100791181 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2122 6 31728363 31736850 Lan2g0421 2 4406194 4414152 PCT
Lan2g0421 2 4406194 4414152 Lan6g2122 6 31728363 31736850 PCT