Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0421 ATGCTTTCCTTCTCCGGCTCTCGTTTTCCGTCAACAAACCCTTCATTCCCATCACCACCAAGTGCAACTGCAAGTTTTTGTCTTGACTCATACACAACAAATTCTAACACCCCATCTCATAGTTTTGAACACAAGGCTCCTTCTGATGTTAAAGTTGGAAACTTTACAAGAAAAAGTGGGAAGAGAGTGATGGGGATGAACCCAATTGAGGTTGGTGATGGTGGGAAGAAGAATAAGAAAAAGGGGAAAGAGAAAATATACTGGGTTTGCAGCAATTGTGGGTACACTGCAGGGCAATGGTGGGGTGTGTGTAGGTCATGCACTGTAGCTGGGACTATGAAAGAGTTTCATGAGACTAAAACAAGTGAAGTTGATAGTAAAGTTAATGGATTTATGGTTTTAGAAGATGATGGTGTTGGGTCATGGCTTCCTCAACATGAAGGTGAACTTAGGCCTTTGAGATTGGTAGATATAAATAGGGGACTTAATCATCAGCATTGGAGAATTCCTTTGTCTGGTTCTTTTGGAAATGAAGTTTCGAGAGTACTTGGTGGTGGTCTTGTACCAGGCTCCTTAACTTTAGTTGGTGGTGATCCTGGTGTTGGTAAAAGTACATTGTTGTTGCAGATTGCTGCAATGATCTCAGAAGGGGGCAATAACGGTGAAGTATCTCCAGTACTATATGTCTCTGGTGAAGAGAGTGTTGAACAAATTGGTAACAGAGCAGATCGCCTTATGATTGAATCAGATATTTATGTATATTCAAGTAATGATATTGAGGACATATTGAAGAAAGTTCGGGATATCTCCCCTCGGGCTCTAGTTGTTGATTCAATACAAACCGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGCGTTATTCAGGTGAAGGAATGTACTTCAGCTTTGCTGCGATTTGCGAAGACAACAAACATCCCAGTTCTTTTGATTGGACATGTTAATAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCACATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTGCTCTGCCCATCGTATGCTCCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAATTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCCAATGCCAGTGAAATGTTTCTCAGTGAACAGCACTTAGATTCAGAAATATTAGCTGGGATGGCTGTTGCTGTAATAATGGATGGGTCCCGAACATTCCTTATCGAAATCCAGGCACTTTGTCTTTCTGGTTCAACAGGATCAAGGCAAGTTAATGGAATCCATGCAAGTAGAGCTGACATGATCATATCTGTTCTCATAAAGCAAGCAGGTCTTCGTCTCCGAGAAAATGCTGTGTATTTGAATGTTGTTAGTGGATTGACACTGACTGAGACTGCAGGAGATCTTGCAGTAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGCTCCCTATTCCAAACGACATCGCATTCATCGGTGAAATTGGTCTCGGTGGTGAGCTTCGTATGGTACCTAGAATGGAGAAAAGGATACATACAGTTGCAAAATTGGGTTACAGAATGTGTGTAGTGCCAAAGACAGCTGAAAAGGCTTTAGGAACTGAATCTTTAGAAAATATGAAAGTTGTTGGTTGCAGGAATCTGAAAGATGTTATTAACACTGTATTTCCCAAGTTAATGAAGAGAAGCTAG 1710 0.4152 MLSFSGSRFPSTNPSFPSPPSATASFCLDSYTTNSNTPSHSFEHKAPSDVKVGNFTRKSGKRVMGMNPIEVGDGGKKNKKKGKEKIYWVCSNCGYTAGQWWGVCRSCTVAGTMKEFHETKTSEVDSKVNGFMVLEDDGVGSWLPQHEGELRPLRLVDINRGLNHQHWRIPLSGSFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAMISEGGNNGEVSPVLYVSGEESVEQIGNRADRLMIESDIYVYSSNDIEDILKKVRDISPRALVVDSIQTVYLKGIMGSPGGVIQVKECTSALLRFAKTTNIPVLLIGHVNKSGDIAGPRVLEHIVDVVLYMEGEKCSAHRMLRAVKNRFGSTDELGIFEMSHSGLQAVSNASEMFLSEQHLDSEILAGMAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIHASRADMIISVLIKQAGLRLRENAVYLNVVSGLTLTETAGDLAVAAAICSSFLELPIPNDIAFIGEIGLGGELRMVPRMEKRIHTVAKLGYRMCVVPKTAEKALGTESLENMKVVGCRNLKDVINTVFPKLMKRS* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0421 569 Gene3D - 178 385 IPR027417 -
Lan2g0421 569 Gene3D - 397 569 IPR014721 -
Lan2g0421 569 Pfam AAA domain 182 325 - -
Lan2g0421 569 TIGRFAM sms: DNA repair protein RadA 83 558 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lan2g0421 569 SUPERFAMILY Ribosomal protein S5 domain 2-like 358 562 IPR020568 -
Lan2g0421 569 SMART AAA_5 189 347 IPR003593 -
Lan2g0421 569 PRINTS DNA repair protein radA signature 90 114 - -
Lan2g0421 569 PRINTS DNA repair protein radA signature 181 209 - -
Lan2g0421 569 PRINTS DNA repair protein radA signature 277 301 - -
Lan2g0421 569 PRINTS DNA repair protein radA signature 316 344 - -
Lan2g0421 569 PRINTS DNA repair protein radA signature 351 377 - -
Lan2g0421 569 PRINTS DNA repair protein radA signature 426 449 - -
Lan2g0421 569 Pfam Rubredoxin metal binding domain 88 115 IPR041166 -
Lan2g0421 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 372 IPR027417 -
Lan2g0421 569 Pfam Subunit ChlI of Mg-chelatase 443 533 - -
Lan2g0421 569 PANTHER DNA REPAIR-LIKE PROTEINRADA 11 563 - -
Lan2g0421 569 PANTHER DNA REPAIR PROTEIN RADA 11 563 - -
Lan2g0421 569 ProSiteProfiles RecA family profile 1. 168 321 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0421 Lan-Chr2 4406194 4414152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0421 K04485 - gmx:100794165 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2122 6 31728363 31736850 Lan2g0421 2 4406194 4414152 PCT
Lan2g0421 2 4406194 4414152 Lan6g2122 6 31728363 31736850 PCT