Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1710 ATGGCAACCTCATCCTTCTCCACCAACTTTCTCTCCACTATCTTACCCACAAAACCACCCTCACAATTCAACCTCTCCTCCCCTTCCTTCATTCCCATTCCATCTCATAATAAACTCAACATAGTCCCACCACTTGTTTCTAAACATGATAATTACTCGGTCTCTTCTGATTTATCATCAGTCATTTGTCCGTCCCTCGGACATGTAAACACGCTCTTCTACCAGTCTGGATATAATGTTCAGGTGGTAGTCGACGATAACGAGTCCGAAGAGAGGCTTCTGAATAGGTTTAGGAGGGAAGTTATGAAAGCTGGTGTAATTCAAGAGACTAAGAGAAGAAGGTACTTTGAAAACAAGCAGGAGGAGAAGAAGCGAAAGCATCGTGAGGCTGCTAAGCGTAACAGCAGAGCTAGGCGCTTCTCTCGGTTTAGACCTCCTATGCAAAACAAGCCGGATATTCCAGAAGCCAAGAAGGTAGAGGATGATGATAACTGGGATATACCTGAAGGAACACTTTGA 519 0.4432 MATSSFSTNFLSTILPTKPPSQFNLSSPSFIPIPSHNKLNIVPPLVSKHDNYSVSSDLSSVICPSLGHVNTLFYQSGYNVQVVVDDNESEERLLNRFRREVMKAGVIQETKRRRYFENKQEEKKRKHREAAKRNSRARRFSRFRPPMQNKPDIPEAKKVEDDDNWDIPEGTL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1710 172 Hamap 30S ribosomal protein S21 [rpsU]. 79 135 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 38 170 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 MobiDBLite consensus disorder prediction 151 165 - -
Lan6g1710 172 MobiDBLite consensus disorder prediction 117 172 - -
Lan6g1710 172 Pfam Ribosomal protein S21 81 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 PRINTS Ribosomal protein S21 family signature 83 91 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 PRINTS Ribosomal protein S21 family signature 91 100 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 PRINTS Ribosomal protein S21 family signature 103 113 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 PRINTS Ribosomal protein S21 family signature 115 125 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 38 170 - -
Lan6g1710 172 TIGRFAM S21p: ribosomal protein bS21 80 136 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lan6g1710 172 Gene3D Ribosomal protein S8 94 132 IPR038380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1710 Lan-Chr6 28240197 28242104 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1710 - - rcu:8271463 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1710 6 28240197 28242104 Lan20g1422 20 20885773 20887819 PCT
Lan20g1422 20 20885773 20887819 Lan6g1710 6 28240197 28242104 PCT