Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1643 ATGGCCAAGGGCGTAATCTCAGATGACGAAGATGAGGTTGAACTCGACGAGGAGGAGAGGGAACCTGTCGATGGGGATGGCTTAGATGAGGGTCGCGATGTGGACGATGATGAAGATGAAGAAGAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTTGATGGGGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGACGAAGAACGCCACAAGAGGAGAAAGAAGAAGAGAAAGGAGGAGTATATTCTTGACGAAGATGATTATGAGCTTCTGGAAGACAATAACATCAATATTCATCGTCGGAAGGACATTAAAAAGTTCAAGCGGCTGAAAAAAGGTCAGAGGGATACTGAGGAGGAACCATCTGGGCTATCTGATGAGGAGGATTTTGTTGGAAATGGTAAAGTTGGGAGAACTGCTGAGGAGAAGCTTAAACACCGTTTATTTGGTGATGAAGAAGCTCTACTTGAGGATATTGTTGAAGAGGAGGAACAAGGAGAAGAGGAGGAGGATGCAGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAATTGATGAGAATGGAGCTGCTATGAGGCGAAGGAAGCTGAAGAGAAAGAAAACTAGGCAGGCACCTGGAGTCTCTTCCTCAGCTGTACAAGAAGCTCAGGATTTATTTGGTGATGTTGAAGAGTTGCTGCAGACTCGCAAGAAAAATCTAGAGTTACATGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTATTATATCTGAGAAGTATATGACAGAGAAGGATGACCGGATTAGGGAGGTTGATCTTCCAGAGAGAATGCAGATATCTGAGGAGAGCACTGGTACTCCTCCACTGGATGGAAGTATAGATGAAGAGAGCCAGTGGATAGTTAAGCAACTTAGTGATGGAGCAGTCCCTTGGATTTGCAAAAAAATCCCAACTCCTCAAAATAATAGAAAGGACCTACCAATTGACGAGAATGATATTATTAGATTTTTGGAACTGTATCATGTGCAAAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTTAAGCCTATTGAAAGACCTAGAGCGACATGAAGCTGGTGATGAGAATTCGGAAAAGAATAACATGACACCTGCTCTAAAGTGGCACAAGGTATTTTGGGCTCTTCAGGACTTAGACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAATGCCTTAGAATCACACTATAGTAAACGGTTTGAAGAAGAGTCCCGACGTATTTATGATGAAACAAGACTAAACTTGAACCAGAAATTATTTGAATCAGTTATGACATCATTGAAGGAGGCAGAATCTGAGAGGGAGGTTGATGATGTAGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGCTGATGAAGGACAATACAAGAGACCAAAAAGGAAGTCCATATACAGCACTTACAGTAAGGCAGGTCTGTGGGAGGTTGCGAACAGGTTTGGGTGTAGTTCTGAGCAGCTTGGAATATGTCTATCTGAGGTTAAGGTGCCTGAGTTGGTAGATCCAAAGGAAACACCAGAGGAGATGGCTTCAAACTTCACATGTGCTATGTATAGTACCCCTGAAGAAGTACTTAAGTCTGCTAGGCACATGGCAGCTACTGAGATAAGTTGTGAGCCTAGTATTAGGAAACATGTTCGTAGCCACTTTCTTGACAATGCTCTGGTGTCAACTTGTCCTACTGCCAGTGGAAATGTAGCAATTGATTCTTTTCATGACTTTGCTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTGATGATGCACAGTGGCTCCTCATACAGAAGGCAGAAGAGGAGAAACTTCTTCAAGTTTCTATTAAGCTTCCTGAAGAGAATCTTAATAAATTGATAGATCAATTCAATGAGTATTATGTTAGTGATAGTGTTAGCAGATCTGCTCAATTGTGGAATGAACAGAGGAAGTCCATACTGCATGATGCCATTTTTCGACTTCTTTTACCGTCAATGGAAAAAGAGGCAAGAGGTGTCTTGGCAAGCAAGGCAAAGAATTGGCTACTTATGGAGTATGGGAAGGCCTTATGGAATAAGGTTTCTGTCGGACCTTATCAACAGAAGGAGAATGCTCTTAACTCTGATGATGAGGCTGCACCTAGGGTTATGGCCTGCTGTTGGGGCCCCGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCAGGGGAAGTGCTAGATGTGCTTTACACTGGATCCCTTACTTTAAGGTCACAGAATGCTAGTGACCAACAACGGAAGAAGAATGACCAGGAACGTGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGTGCAGTAAATTTGTCTTGCACTCGTTTAAAGGAAGATCTATATGAGGTCATCTTTAAGATGGTAGAGGAAAATCCTAGAGATGTTGGGCATGAAATGGATGGGCTCAGTATTGTGTATGGAGATGAATTTATTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAGCTTCCTTCGCAGCAAGGTATAGTGAGGCGAGCTGTTGCTCTTGGCCGGTATCTCCAGAACCCATTGGCAATGGTTGCAACCTTATGTGGACCCAGAAGGGAAATTTTATCATGGAAACTGAGCTCTTTGGAGAGCTTTCTCAACCCAGATGATAAGTTTGGGATGATTGATCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATCAATTTAGCAATAAGTCACGAGTGGTTATTTTCTCCTTTAAAATTTATTTCTGGGCTTGGTCCACGTAAGGCTGCATCCTTACAGAGATCCTTGGTTAGAGCTGGTGCAATTTTTACCAGGAAGGACTTTTTGAAGGAACACAAACTTCAGAAGAAGGTTTTTGTCAATGCTGTTGGTTTCTTGCGTATCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCGAATACATTGATTTGCTGGATGATACAAGAATTCATCCAGAATCGTATGCTCTTGCACAAGAGTTGGCCAAAGATGTGTATGACGAGGATGGCACAGGTGATGCAAATGATGATGATGATGCATTGGATTTGGCCATAGAGCATGTCAGAGAACGACCTAGTTATTTGAAAAACCTTGATGTTGTGGAATATGCTACTGCGAAAGAAGAGCAAAAGAAGAAACAACAATCAAGCCTTGTTAACCTTCTTAAGAAAATAGAAACTTTGTATGATGTAAAAAGTGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAGAATGAGGAATTCTATATGATTTCAGGTGAGACTGAGGAGACCCTTGCTGAAGGTAAAATTGTCCAAGCCACAATTCGCAGAGTGCAGGCCCAGAAAGCAATATGTGGGCTTGACTCTGGAATGACTGGAATCCTGATGAAAGAAGACTATTCAGATGATTATAGAGATATAATTGAATTATCTGATAGGCTACACGAAGGCGACATGCTCACTTGTAAAATCAAGTCAATTCAGAAAAATAGGTATCAAGTCTTCCTTGTTTGTAAGGATAGTGAAATGAGAAGTAACCGGCTACATAATAGCCGTGACCTTGACCCCTATTACCATGAAGATCGAACCTGTTTGCAGAGTGAACAAGATAAAGCTCGAAAAGAAAAAGAGCTTGCAAAGAAGCATTTCAAGTCAAGGATGATTATTCATCCCCGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTTTTGTCAGGCAAAGATCTTGGTGATAGCATTATCCGCCCTAGCTCACGTGGACCAGAGTGTCTTACTTTAACTCTCAAAATCCATGATGGGGTATATGCACACAAGGAAATTGTCGAAGGTGGGAAGGAACGCAAGGACATTACTAGCTTACTTCGAATTGGGAAGACGCTAAAAATTGGAGATGACACTTTCGAAGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTGACTCACCTGAAGACAATGTTAAACTATCGCAAGTTCAGAAGGGGTACAAAATCTGAAATAGATGAACTTTTGAGGATTGAAAAAGTCGAGAATCCTCTGCGCATAGTCTACAGTTTTGGCATCTTGCATGAACATCCCGGGACATTTATACTAACTTATATAAGAAGTAGCAATCCACATCATGAGTATATTGGGCTTCATCCAAAGGGATTCAGGTTCCGAAAAAAGATGTTTGAGGACATTGATAGGCTTGTGGCTTATTTTCAGAGGCATATTGATGATCCTCAACATGATTCAACTCCCTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGAAGTCCTGCAGCTGGTGGCTCATCAAGGGCATCTGGGGGTAGTGGCTGGGGTAATTCCAACAGTGAGGGTGGCCGGAGAGGTCACTCTTATGATCGGGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGGGCTGATTATAGAAACAATGGGAATCTAGATGAACACCCCAGTGGACTGCCTCGTCCATATGGTGGTGGACGTGGCCGTGACCGAGGTTCTTATAACAATGATAGCAGAGGACATGGCTCCAATAATGAAAGAGGGGGCAGAAGGGGTTCTAATGCAAGGGATGGCGATGATGATTTAAGCAATTTTCCAGGTGCTAAGGTTCAAAATTCCCCTGGCAGGGAAGCTTTTCCTGGTGGTTGGGGTGGAAGTGGTGGAGGTAGTGGTTGGGGAGGTGGAGCCGGTACCAGCGACAGCGGTGGTTGGGGAGGTGGTGCTGGTTAA 4839 0.4286 MAKGVISDDEDEVELDEEEREPVDGDGLDEGRDVDDDEDEEEGQDEYENDGFIVDGDEEEQDEEERAESDEERHKRRKKKRKEEYILDEDDYELLEDNNINIHRRKDIKKFKRLKKGQRDTEEEPSGLSDEEDFVGNGKVGRTAEEKLKHRLFGDEEALLEDIVEEEEQGEEEEDADIGEDDEMADFIVDEEEIDENGAAMRRRKLKRKKTRQAPGVSSSAVQEAQDLFGDVEELLQTRKKNLELHEYRETRLEDEFEPIIISEKYMTEKDDRIREVDLPERMQISEESTGTPPLDGSIDEESQWIVKQLSDGAVPWICKKIPTPQNNRKDLPIDENDIIRFLELYHVQKLDIPFIAMYRKEECLSLLKDLERHEAGDENSEKNNMTPALKWHKVFWALQDLDRKWLLLQKRKNALESHYSKRFEEESRRIYDETRLNLNQKLFESVMTSLKEAESEREVDDVDSKFNLHFPPGEAGADEGQYKRPKRKSIYSTYSKAGLWEVANRFGCSSEQLGICLSEVKVPELVDPKETPEEMASNFTCAMYSTPEEVLKSARHMAATEISCEPSIRKHVRSHFLDNALVSTCPTASGNVAIDSFHDFAGVKWLREKPLSKFDDAQWLLIQKAEEEKLLQVSIKLPEENLNKLIDQFNEYYVSDSVSRSAQLWNEQRKSILHDAIFRLLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENALNSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNASDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDLYEVIFKMVEENPRDVGHEMDGLSIVYGDEFIPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRREILSWKLSSLESFLNPDDKFGMIDQVMVDVTNQVGLDINLAISHEWLFSPLKFISGLGPRKAASLQRSLVRAGAIFTRKDFLKEHKLQKKVFVNAVGFLRIRRSGLAASSSEYIDLLDDTRIHPESYALAQELAKDVYDEDGTGDANDDDDALDLAIEHVRERPSYLKNLDVVEYATAKEEQKKKQQSSLVNLLKKIETLYDVKSELIQGFQDWRKQYEEPSQNEEFYMISGETEETLAEGKIVQATIRRVQAQKAICGLDSGMTGILMKEDYSDDYRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLHNSRDLDPYYHEDRTCLQSEQDKARKEKELAKKHFKSRMIIHPRFQNITADEAMEFLSGKDLGDSIIRPSSRGPECLTLTLKIHDGVYAHKEIVEGGKERKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVTHLKTMLNYRKFRRGTKSEIDELLRIEKVENPLRIVYSFGILHEHPGTFILTYIRSSNPHHEYIGLHPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSTPSIRSVAAMVPMRSPAAGGSSRASGGSGWGNSNSEGGRRGHSYDRDRSSTPGSRTGRADYRNNGNLDEHPSGLPRPYGGGRGRDRGSYNNDSRGHGSNNERGGRRGSNARDGDDDLSNFPGAKVQNSPGREAFPGGWGGSGGGSGWGGGAGTSDSGGWGGGAG* 1613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1643 1612 Gene3D - 257 997 - -
Lan6g1643 1612 Gene3D - 1003 1107 IPR042066 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 1546 1561 - -
Lan6g1643 1612 ProSiteProfiles S1 domain profile. 1134 1205 IPR003029 GO:0003676
Lan6g1643 1612 Gene3D SH2 domain 1242 1353 IPR036860 -
Lan6g1643 1612 SUPERFAMILY SH2 domain 1259 1345 IPR036860 -
Lan6g1643 1612 Gene3D - 482 927 IPR023323 -
Lan6g1643 1612 Pfam Acidic N-terminal SPT6 35 120 IPR028083 -
Lan6g1643 1612 SUPERFAMILY Nucleic acid-binding proteins 1129 1209 IPR012340 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 1462 1612 - -
Lan6g1643 1612 SMART S1_6 1132 1205 IPR022967 -
Lan6g1643 1612 CDD SH2_Cterm_SPT6_like 1355 1441 IPR035018 -
Lan6g1643 1612 Gene3D - 1127 1214 IPR012340 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 1 82 - -
Lan6g1643 1612 SUPERFAMILY Ribonuclease H-like 734 889 IPR012337 -
Lan6g1643 1612 SMART rnase_8s 734 852 IPR006641 GO:0006139
Lan6g1643 1612 Coils Coil 156 176 - -
Lan6g1643 1612 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 81 1604 IPR017072 GO:0032968
Lan6g1643 1612 MobiDBLite consensus disorder prediction 1487 1501 - -
Lan6g1643 1612 Pfam SH2 domain 1223 1440 IPR035420 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 113 139 - -
Lan6g1643 1612 CDD SH2_Nterm_SPT6_like 1256 1344 IPR035019 -
Lan6g1643 1612 SUPERFAMILY RuvA domain 2-like 1008 1109 IPR010994 -
Lan6g1643 1612 SUPERFAMILY Tex N-terminal region-like 329 713 - -
Lan6g1643 1612 SUPERFAMILY RuvA domain 2-like 905 995 IPR010994 -
Lan6g1643 1612 SUPERFAMILY SH2 domain 1393 1441 IPR036860 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 162 194 - -
Lan6g1643 1612 Pfam Helix-hairpin-helix motif 893 994 IPR032706 -
Lan6g1643 1612 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 81 1604 - -
Lan6g1643 1612 PIRSF Spt6 3 1508 IPR017072 GO:0032968
Lan6g1643 1612 Pfam HHH domain 1009 1031 IPR041692 -
Lan6g1643 1612 Gene3D - 290 481 IPR023319 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 1469 1486 - -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 162 222 - -
Lan6g1643 1612 Gene3D SH2 domain 1354 1450 IPR036860 -
Lan6g1643 1612 MobiDBLite consensus disorder prediction 9 67 - -
Lan6g1643 1612 Pfam Holliday-junction resolvase-like of SPT6 733 889 IPR028231 -
Lan6g1643 1612 Gene3D - 724 1126 IPR037027 GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1643 Lan-Chr6 25674848 25685344 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1643 K11292 - gmx:100809136 2485.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0819 10 11629664 11639959 Lan6g1643 6 25674848 25685344 LSH