Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0819 ATGGCCAGAGGCGTAATCTCAGACGACGAAGATGAGGTTGAACTCGACGAGGAAGAGAGGGAACCTGTCGATGGAGATGGATTGGAGGAGGGTCGCGATGTGGATGACGATGAAGAGGATGAAGAAGAAGAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTTGACGAGGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGACGAGGAACGCCAGAAGAGGAGAAAGAAGAAGAGAAAGGAGGAATATGTCCTTGATGAAGATGATTATGAGCTGCTGGAAGACAATAACATCAATATTCATCGTCGGAAGGACATTAAAAAGTTCAAGCGGCTGAAAAAAGGCCAGAGAGATACTGAGGAGGAGCCGTCTGGGCTATCTGATGAGGAGGATTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACACCGTTTATTTGGCGATGATGAAGGAGCTCCACTTGAGGATATTGTTGAAGATGAGGAACAAGGAGAGGAGGAGGAGGAGGATGCAGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCTATGAGACGAACAAAGCCGAAGAGAAAAACTAGGCAGGCACATGGAGTCTCTTCCTCAGCTGTTCAAGAAGCTCAAGATATATTCGGTGATGTTGACAACTTTCTGCTGACTCGCAAGAAAAATCTAGAGTCAAATGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTATTCTTTCTGAGAAGTATATGAGAGAGGAGGATGACCAGATTAGGGAAGTTGATCTTCCAGAGAGAATGCAGATATCGGAGATGAGTACTGGCACTCCTCCACTGGATGGAAGTATAGATGAAGAGAGCCAGTGGATAGTTAAGCAACTTAGTGAAGGGGCAGTCCCTTGGATTTGCAAAAAAATTCCAACCTCCCAAAATAATAGAAAGAACCTACCAATTGACGAAAATGATATTATCAGATTTTTGGAACTGTATCATGTGCAAAAGTTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTTAAGCCTGTTGAAAGACCTAGAGCGACCCGAAGCTGGTGGTGAGAGTTTGGATAAGAATAACATGACACCTACTCCAAAGTGGCACAAGGTGCTTTGGGCTCTTCTGGACTTGGATAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGGTTGCCTTAGAGTCGTACTATACTAAACGGTTTGAAGAGGAGTCCCGGCGTATTTATGATGAAACAAGACTAAACTTGAACCGGCAATTATTTGAATCAGTTATGAGATCATTGAAGGAGGCGGAATCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGCGTTGATGAAGGACAGTACAAGAGGCCAAAAAGGAAGTCAGTATATAGCACTTACAGTAAGGCAGGCCTGTGGGAGGTTGCGAACAGGTTTGGATGTAGTTCTGAGCAGCTTGGAATATGTCTATCTGAAGTTAAGGTGCCTGAGTTGGTAGACCCAAAGGAAACACCAGAGGAGATGGCTTCAAACTTTACATGTGCTATGTATAATACCCCTGAAGAAGTACTTAAGTGTGCTAGGCACATGGCAGCTATTGAGGTAAGTTGCGAACCTAGCATTAGGAAACACGTTCGTAGCCACTTTCTTGATCATGCTGTGGTGTCAACATGTCCTACTGCTGATGGGAATGTAGCAATAGATTCTTTTCATGACTTTGCTGTGGTAAAGTGGCTCCGAGAGAAGCCTCTGTCTAAATTTGAAGACGCACAGTGGCTTCTTATACAGAAGGCAGAAGAGGAGAAACTTCTTCAAGTCACTATTATGCTTCCTGAAGAGAATCTTAATAAATTAATTGACCAATTCAATGAGTATTATGTTAGCGATAGTGTTAGCAGATCTGCTCAGCTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGCCTTCTTTTACCGTCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGCAAAGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCCTTGTGGAATAAGGTTTCTGTGGGACCTTATCAACAGAAGGAGAATGATCTTAGCTCTGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGTTGGGGCCCTGGAAAGCCACAAACAACATTTGTTATGTTGGATTCATCAGGGGAAGTGCTAGATGTGCTTTACACTGGATCCCTTACTTTAAGGTCACAGAATGCTGGTGACCAACAACGGAAGAAGAATGACCAGGAACGCGTTTTGAAGTTTATGACAGATCACCAACCACACGTTGTTGTTTTAGGTGCAGTAAATTTGTCTTGCACTCGTTTAAAGGAAGATCTATATGAGGTCATTTTTAAGATGGTAGAGGAAAACCCTAGGGATGTTGGGCATGAAATGGATGGGCTCAGCGTTGTGTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCCCAGCAAGGTATAGTCAGGCGGGCTGCTGCTCTTGGACGATATCTCCAGAACCCATTGGCAATGGTTGCAACCTTATGTGGACCCAGAAAGGAAATATTATCATGGAAACTGAACTCTTTGGAGAGCTTTCTCAACCCAGATGATAAATTTGGGATGGTTGAGCAGGTTATGGTGGATGTGACCAATCAGGTTGGCTTAGACATTAATTTATCAATAAGTCACGAGTGGTTATTTTCTCCTTTACAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCTTGGTAAGAGCTGGTGCAATTTTTACCAGGAAGGATTTTTTGAAAGAACATAAGCTGGAGAAAAAGGTTTTTGTCAATGCAGTTGGTTTCTTGCGTATCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCGAATATATTGATTTGCTGGATGATACAAGAATTCATCCAGAATCATATGTTATTGCACAAGAGTTGGCCAAAGATGTGTATGAGGAGGATGGCACAGGTGATGCAAATGATGATGATGATGCATTGGATTTGGCCATAGAGCATGTTAGAGAAAGACCTAGTTATTTGAAAAACCTTGATGTTGTGGAATATGCTACTGCGAAAGAAGAACAAAAAAAGAAACAACAACAAACTGTTATCAACCTTCTTAAGAAAATAGAAACTTTGCATGACATAAAAAGTGAATTGATTCAAGGTTTTCAGGATCGTCGTAAGCAATATGAAGAACCAAGTCAAGATGAGGAATTTTATATGATTTCAGGTGAGACTGAGGAGACTCTTGCTGAAGGTAAAATTGTCCAAGCCACAGTTCGCAGAGTGCAGGCCCAGAAAGCAATATGTGGACTTGACTCTGGAATGACTGGAATCCTGATGAAAGAAGACTATTCAGATGAATATAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGCGACATGCTCACATGTAAAATCAAGTCAATTCAGAAAAATAGGTATCAAGTCTTCCTCGTTTGTAAGGATAGTGAAATGAGAAGTAATCGGCTACAGAACAGCCGTGATTTTGACCCCTATTACCATGAAGACATACGCTGTTTGCAGAGTGAACATGACAAAGCTCGGAAACAAAAAGAGCTTGCAAAGAAGCGTTTCAAGTCAAGGATGATAATTCATCCCCGCTTTCAGAACATAACTGCAGATGAAGCAATTGAGTTATTGTCTAACAAAGAACCTGGAGAAAGCATTATCCGCCCTAGCTCACGGGGACCAGAGTGTCTTACTCTAACTCTCAAAATTCATGACGGGGTATATGCACACAAGGAAATAGTTGAAGGTGGAAAGGAGCGTAGGGATATTACAAGCTTACTTCAAATTGGGAAGACACTGAAAATTGGAGATGACACATTCGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCCTTGTGACTCACTTGAAGGCAATGTTAAACTATCGCAAGTTCAGAAGGGGCACAAAAGCAGAAATTGATGAACTTTTGAGGATAGAAAAAGCTGAGAATCCTATGCGCATAGTCTACAGTTTTGGCATCTTGCATGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCATGAGTATATTGGGCTTCATCCAAAAGGGTTCAGGTTCCGGAAAAAGATGTTTGAGGACATTGATCGGCTCGTGGCTTATTTTCAGAGGCATATTGATGATTCCCACCATGATTCAACCCCCTCCATTAGATCTGTTGCTGCTATGGTACCAATGAGAAGTCCTGCAGCTGGTGGCTCATCAGGGGCATCTGGGGGTGGCGGCTGGGGTGGTTCACACAGTGAGGGTGGTCGAAGAGGTCATTCTTATGATAGGGATCGATCTTCTACTCCTGGTTCTAGGACAGGACGGGCTGATTATAGAAACAATGGTAATCGTGATGAACACCCCAGTGGACTGCCTCGTCCATACGGTGGTGGTCGTGGCCGTGCTCGAGGTTCTTATAACGACAACAGAGGACATGGCTCCAATAATGAAAGGCAGGACTCTGGCTATGCTGGGGGAAGATGGGTTTCTAATACACGGGAGGGGGGTGATGGTTTAAGCAATTTCCCAGGAGCTAAGGTTCAAAATTCCCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGAGCCGGTTCAGGTGATGCTGAACATGGAAGCTCTGGGTCAGGAACTGCCTCCAAGAAAGCATCCGACAATGGGTGGGGGTCTGCAATTGCCGGCAGTGGCTCTGGTTGGTGA 4902 0.4345 MARGVISDDEDEVELDEEEREPVDGDGLEEGRDVDDDEEDEEEEGQDEYENDGFIVDEDEEEQDEEERAESDEERQKRRKKKRKEEYVLDEDDYELLEDNNINIHRRKDIKKFKRLKKGQRDTEEEPSGLSDEEDFVGSGKVGRTAEEKLKHRLFGDDEGAPLEDIVEDEEQGEEEEEDADIGEDDEMADFIVDEEEVDENGAPMRRTKPKRKTRQAHGVSSSAVQEAQDIFGDVDNFLLTRKKNLESNEYRETRLEDEFEPIILSEKYMREEDDQIREVDLPERMQISEMSTGTPPLDGSIDEESQWIVKQLSEGAVPWICKKIPTSQNNRKNLPIDENDIIRFLELYHVQKLDIPFIAMYRKEECLSLLKDLERPEAGGESLDKNNMTPTPKWHKVLWALLDLDRKWLLLQKRKVALESYYTKRFEEESRRIYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSVYSTYSKAGLWEVANRFGCSSEQLGICLSEVKVPELVDPKETPEEMASNFTCAMYNTPEEVLKCARHMAAIEVSCEPSIRKHVRSHFLDHAVVSTCPTADGNVAIDSFHDFAVVKWLREKPLSKFEDAQWLLIQKAEEEKLLQVTIMLPEENLNKLIDQFNEYYVSDSVSRSAQLWNEQRKLILHDAIFRLLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLSSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNAGDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDLYEVIFKMVEENPRDVGHEMDGLSVVYGDESLPRLYENSRISSEQLPSQQGIVRRAAALGRYLQNPLAMVATLCGPRKEILSWKLNSLESFLNPDDKFGMVEQVMVDVTNQVGLDINLSISHEWLFSPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLKEHKLEKKVFVNAVGFLRIRRSGLAASSSEYIDLLDDTRIHPESYVIAQELAKDVYEEDGTGDANDDDDALDLAIEHVRERPSYLKNLDVVEYATAKEEQKKKQQQTVINLLKKIETLHDIKSELIQGFQDRRKQYEEPSQDEEFYMISGETEETLAEGKIVQATVRRVQAQKAICGLDSGMTGILMKEDYSDEYRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNSRDFDPYYHEDIRCLQSEHDKARKQKELAKKRFKSRMIIHPRFQNITADEAIELLSNKEPGESIIRPSSRGPECLTLTLKIHDGVYAHKEIVEGGKERRDITSLLQIGKTLKIGDDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRRGTKAEIDELLRIEKAENPMRIVYSFGILHEHPGTFILTYIRSTNPHHEYIGLHPKGFRFRKKMFEDIDRLVAYFQRHIDDSHHDSTPSIRSVAAMVPMRSPAAGGSSGASGGGGWGGSHSEGGRRGHSYDRDRSSTPGSRTGRADYRNNGNRDEHPSGLPRPYGGGRGRARGSYNDNRGHGSNNERQDSGYAGGRWVSNTREGGDGLSNFPGAKVQNSPGREAFPGGWGGGAGSGDAEHGSSGSGTASKKASDNGWGSAIAGSGSGW* 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0819 1633 MobiDBLite consensus disorder prediction 1605 1619 - -
Lan10g0819 1633 CDD SH2_Cterm_SPT6_like 1358 1444 IPR035018 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 1 101 - -
Lan10g0819 1633 Pfam Holliday-junction resolvase-like of SPT6 736 892 IPR028231 -
Lan10g0819 1633 Gene3D SH2 domain 1245 1356 IPR036860 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 161 198 - -
Lan10g0819 1633 Gene3D - 1006 1110 IPR042066 -
Lan10g0819 1633 Gene3D - 727 1129 IPR037027 GO:0006139
Lan10g0819 1633 MobiDBLite consensus disorder prediction 115 225 - -
Lan10g0819 1633 ProSiteProfiles S1 domain profile. 1137 1208 IPR003029 GO:0003676
Lan10g0819 1633 SUPERFAMILY RuvA domain 2-like 908 998 IPR010994 -
Lan10g0819 1633 SUPERFAMILY Ribonuclease H-like 737 892 IPR012337 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 1465 1633 - -
Lan10g0819 1633 CDD SH2_Nterm_SPT6_like 1259 1347 IPR035019 -
Lan10g0819 1633 Gene3D - 260 1000 - -
Lan10g0819 1633 SUPERFAMILY RuvA domain 2-like 1011 1112 IPR010994 -
Lan10g0819 1633 SMART rnase_8s 737 855 IPR006641 GO:0006139
Lan10g0819 1633 Gene3D - 485 930 IPR023323 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 9 69 - -
Lan10g0819 1633 SMART S1_6 1135 1208 IPR022967 -
Lan10g0819 1633 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 83 1605 - -
Lan10g0819 1633 SUPERFAMILY Nucleic acid-binding proteins 1132 1213 IPR012340 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 1489 1504 - -
Lan10g0819 1633 Pfam SH2 domain 1229 1443 IPR035420 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 70 90 - -
Lan10g0819 1633 Gene3D - 1130 1218 IPR012340 -
Lan10g0819 1633 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 83 1605 IPR017072 GO:0032968
Lan10g0819 1633 Pfam Helix-hairpin-helix motif 896 997 IPR032706 -
Lan10g0819 1633 SUPERFAMILY SH2 domain 1262 1348 IPR036860 -
Lan10g0819 1633 MobiDBLite consensus disorder prediction 137 160 - -
Lan10g0819 1633 PIRSF Spt6 3 1514 IPR017072 GO:0032968
Lan10g0819 1633 Gene3D - 293 484 IPR023319 -
Lan10g0819 1633 SUPERFAMILY Tex N-terminal region-like 332 716 - -
Lan10g0819 1633 Pfam Acidic N-terminal SPT6 35 122 IPR028083 -
Lan10g0819 1633 Gene3D SH2 domain 1357 1454 IPR036860 -
Lan10g0819 1633 Coils Coil 1231 1251 - -
Lan10g0819 1633 Coils Coil 55 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0819 Lan-Chr10 11629664 11639959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0819 K11292 - gmx:100809136 2504.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0819 10 11629664 11639959 Lan6g1643 6 25674848 25685344 LSH