Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1472 ATGAAGAAATATTTTATGCATGGCAGGGCATTTAGGAGTGCTGTTGTTATTCCGCCATCTTATGATGAGTGGCAGTGCTTAATTCTCCTGAATACCCAACACAACATATCAACAAAACTAACCAACATGTCTGGACCTATGTCCCCCAAGACAGCTCTCGAGAAGACCGACCACGTCGGTTCTTTTAAAAAGAAGGCAATGAGTCTAAGGAATTCGATAACGAGAAGGAGCAGAAGAAGCAGCAGCAAGGTCATGTCTGTCGAAATTGAGGATATCCATGATGCTGAGGAGTTGAAGGCTGTTGATGAGTTCCGTCAGGCACTTGTTTTGGATGAGCTACTCCCCGAAAAGCATGATGATTATCATATGTTGCTCAGATTCCTCAAGGCCAGAAAATTTGACATTGAGAAATCCAAGCAAATGTGGTCTGACATGCTCCAGTGGAGGAAGGAATTTGGTGCTGACACCATCATAGAGGACTTTGAATTCAAGGAACTAGAAGAAGTGTTGCAATATTATCCTCAAGGAAATCATGGAGTAGATAAGGATGGACGACCAGTTTACATTGAGAGATTGGGTCAAGTCGATGCTACCAAGCTGATGCAAGTTACAACCATGGATCGCTATGTCAAATATCATGTTAGAGAGTTCGAAAGGACATTCGATCTGAAGTTTGCAGCTTGTTCCATCGCTGCGAAGAAGCACATCGATCAAAGCACGACCATCCTCGATGTGCAGGGAGTGGGACTTAAGAACTTCAACAAACATGCAAGGGAACTTGTCACTCGCCTTCAGAACATTGATGGAAACAATTACCCAGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCCGGATTCAGAATGTTGTGGAACACCATAAAATCCTTCCTTGATCCAAAGACCACAGCAAAAATCCATGTTCTTAGCAACAAATATCAAAGCAAATTGCTTGAAATAATTGATGCTAGTGAGTTGCCTGAGTTTTTAGGAGGTACTTGCACTTGTGCTGATAATGGAGGCTGCATGCGTTCTGATAAGGGCCCATGGAAGGATCCAGAAATAATTAGGATGGTTCAAAATGGGGAGCACAAATGCTCAAGGAAATGTGAGCCTCAAGTCCTAGAAGAGAAAACAACTTCTGAGGGAAATCAAACTTCCACTTTAGAGGCAAATCTCACTGCACAATTGTCTTCTGTTTTTGCTGAGGTTCCTGCTACTAAAGCTTACAACTATGAGGACTTTGTCCCTGCAGCTGATAAAACTGCTTGGAAAAAGGTTGATGATAATGACAAATTTGCAGTATCAAAAGTCATGGTAGCTGGAGAAGAAAGTTACAACACCATGGCTGATTCATGCAAGATTCATGAGAAAGTGAATTCCCAGATTTTCACTGGTGTAATGGCCTTTGTCATGGGAATAGTGACAATGGTGAGAATGACAAGAAACATGCCAAAGAAGCTCACTGATGCTAACTTCTACTCCAACAATTCTGTGTATGCTGGTGACCAACAAGTTTCTTCTAACCAAATGACTACAAACCCTGCCATTTCTGCTCAAGAATTTGTCACTGTCATGAAGCGCATGGCTGAGTTGGAAGAGAAAATGGTTCACATGAACCAGAATGCTTCTATGCCACCAGAGAAGGAGGAAATGTTGAATGCTGCTATAACCAGAGCAGATGCTTTGGAGCAAGAGCTTATGGCAACCAAGAAGGCTTTGGAAGATTCACTTTCCCAGCAAGAGGAACTTTCTGCTTATATTGAGAAAAAGAAGAAGAAAAAGAAATTGTTCGCATGGTAA 1806 0.4203 MKKYFMHGRAFRSAVVIPPSYDEWQCLILLNTQHNISTKLTNMSGPMSPKTALEKTDHVGSFKKKAMSLRNSITRRSRRSSSKVMSVEIEDIHDAEELKAVDEFRQALVLDELLPEKHDDYHMLLRFLKARKFDIEKSKQMWSDMLQWRKEFGADTIIEDFEFKELEEVLQYYPQGNHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYVKYHVREFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELVTRLQNIDGNNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLSNKYQSKLLEIIDASELPEFLGGTCTCADNGGCMRSDKGPWKDPEIIRMVQNGEHKCSRKCEPQVLEEKTTSEGNQTSTLEANLTAQLSSVFAEVPATKAYNYEDFVPAADKTAWKKVDDNDKFAVSKVMVAGEESYNTMADSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNNSVYAGDQQVSSNQMTTNPAISAQEFVTVMKRMAELEEKMVHMNQNASMPPEKEEMLNAAITRADALEQELMATKKALEDSLSQQEELSAYIEKKKKKKKLFAW* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1472 601 Coils Coil 554 585 - -
Lan6g1472 601 Pfam CRAL/TRIO domain 171 333 IPR001251 -
Lan6g1472 601 SMART sec14_4 165 336 IPR001251 -
Lan6g1472 601 Pfam CRAL/TRIO, N-terminal domain 116 144 IPR011074 -
Lan6g1472 601 SUPERFAMILY CRAL/TRIO N-terminal domain 94 161 IPR036273 -
Lan6g1472 601 CDD SEC14 166 334 IPR001251 -
Lan6g1472 601 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 165 339 IPR001251 -
Lan6g1472 601 SUPERFAMILY CRAL/TRIO domain 165 361 IPR036865 -
Lan6g1472 601 Gene3D - 153 364 IPR036865 -
Lan6g1472 601 SMART CRAL_TRIO_N_2 120 145 IPR011074 -
Lan6g1472 601 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 44 598 - -
Lan6g1472 601 PRINTS Cellular retinaldehyde-binding protein signature 123 145 - -
Lan6g1472 601 PRINTS Cellular retinaldehyde-binding protein signature 292 311 - -
Lan6g1472 601 PRINTS Cellular retinaldehyde-binding protein signature 325 334 - -
Lan6g1472 601 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 44 598 - -
Lan6g1472 601 Gene3D - 74 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1472 Lan-Chr6 21570595 21577015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1472 99 330 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 8.98e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1472 - - lang:109350159 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1472 6 21570595 21577015 Lan6g1472 6 21570595 21577015 ECH
Lan6g1472 6 21570595 21577015 Lan17g1259 17 20898188 20908705 LSH