Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1259 ATGTCTGGACCTCTGTCCCCCAAGACAGCTCCTGAGAAGACTGACCGTGTCGGTTCTTTAAGAAAGAAGGCAATGAGTTTCAGGAATTCTATAACAAGAAGGAGCAGAAGAAGCAGCAGCAAGGTTATGTCCATTGAAATTGAGGATATCCATGACGCTGAGGAGTTGAAGGCTGTTGATGAATTCCGTCAAGCTCTTGTTTTGGATGAGCTACTCCCTGAAAAGCATGATGATTATCATATGATGCTAAGATTCCTCAAGGCCAGGAAATTCGACATTGAGAAATCCAAGCAAATGTGGTCTGACATGCTCCAATGGAGGAAGGAATTTGGTGCTGACACTATCATAGAGGACTTTGAATTCAAGGAACTTGATGAAGTGTTGCAATATTATCCCCAAGGAAATCATGGAGTTGATAAGGATGGACGACCCGTGTACATTGAAAGATTGGGTCAAGTTGATGTTACCAAGCTGATGCAAGTCACAACCATGGATCGATATGTTAAATATCATGTCAGAGAGTTTGAGAGGACATTTGATTTGAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAACACATCGATCAAAGTACAACCATCCTCGATGTTCAGGGAGTGGGTCTTAAGAACTTCAACAAACATGCCAGGGAACTTGTCACCCGCCTTCAGAACATTGATGGAAACAATTATCCAGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACAGCATAAAATCTTTCCTTGATCCAAAGACCACATCAAAAATCCATGTTCTTAGCAACAAGTATCAGAGCAAATTGCTTGAAATAATTGATGCTAGTGAGTTGCCAGAGTTTTTAGGAGGTACTTGTACTTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGCCCATGGAAGGACCCTGAAATAATAAGGATGGTTCAGAATGGAGAGCACAAATGCTCAAGAAAATGGGAGCTTCCTGTGGTGGAAGAGAAAACAACAACTTGTGAGGAAAATCAGACTTCCACTTTGGAGGCAAATCTCACCTCACAATTGTCTTCTGTTATTGCTCAGGCCCCTGCTACTAAAGCTTACAACTACGATGACTTCGTCCCTGCGGCTGATAAAACTGCTCGGAAAAAGGTTGATGATAATGACACTTTTGCATTATCAAAAGTTGGAGTAGAAAGTTACGCCATGGCCGATTCGTGCAAGATTCACGAGAAAGTGAATTCCCAGATTTTCAGTGGTGTGATGGCCTTTGTGATGGGAATAGTGACCATGGTAAGAATGACAAGAAACATGCCAAAGAAGCTCACTGATGCTGACTTCTACTCCAATTCTGCTTACAAGGGTAGCCAGAAAGTCTCTTCTGACCAAATGACTACTAACCCTGCAATTTCGGCTCAAGAATTCATGACCGTGATGAAACGAATGGCCGAGTTGGAAGAGAAAGTGATCAACATGAATCAGAATGCTTGCATGCCACCAGAGAAGGAGGAAATGTTGAATGCTGCTATAACCAGAGCAGATGCATTGGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCCACTCAACAGGAGCTATCTGCTTATATTGAGAAAAAGAAGAAAAAGAAGAAGTTGAGTGTTTGTGCGAGCCAAAATCGGAGGAATTATTGTCAAAAAATCAAGTTTCTGGACAAAAACAACCTAGGCCTAATGCAGGAATTACTCCCAGCACATCTGACAGACCAGGAAGCTACGTCCAACACAATCCATGCAATGAGCGAAACTAGCACCACTCAGAATTCACACCGAGTGCAATCCCTATGTTGGGCGAAATCAGGAAGAAATTTTGACGTATCCTTGTGTTGGACAATTTCGTCCAACATAGGAGATGTGCCCCACACAACTTGGCTAGGTGGCATAAAATCTTTCCTTGATCCAAAGACCACATCAAAAATCCATGTTCTTAGCAACAAGTATCAGAGCAAATTGCTTGAAATAATTGATGCTAGTGAGTTGCCAGAGTTTTTAGGAGGTACTTGTACTTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGCCCATGGAAGGACCCTGAAATAATAAGGATGGTTCAGAATGGAGAGCACAAATGCTCAAGAAAATGGGAGCTTCCTGTGGTGGAAGAGAAAACAACAACTTGTGAGGAAAATCAGACTTCCACTTTGGAGGCAAATCTCACCTCACAATTGTCTTCTGTTATTGCTCAGGCCCCTGCTACTAAAGCTTACAACTACGATGACTTCGTCCCTGCGGCTGATAAAACTGCTCGGAAAAAGGTTGATGATAATGACACTTTTGCATTATCAAAAGTTGGAGTAGAAAGTTACGCCATGGCCGATTCGTGCAAGATTCACGAGAAAGTGAATTCCCAGATTTTCAGTGGTGTGATGGCCTTTGTGATGGGAATAGTGACCATGGTAAGAATGACAAGAAACATGCCAAAGAAGCTCACTGATGCTGACTTCTACTCCAATTCTGCTTACAAGGGTAGCCAGAAAGTCTCTTCTGACCAAATGACTACTAACCCTGCAATTTCGGCTCAAGAATTCATGACCGTGATGAAACGAATGGCCGAGTTGGAAGAGAAAGTGATCAACATGAATCAGAATGCTTGCATGCCACCAGAGAAGGAGGAAATGTTGAATGCTGCTATAACCAGAGCAGATGCATTGGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCCACTCAACAGGAGCTATCTGCTTATATTGAGAAAAAGAAGAAAAAGAAGAAGTTGTTCGCATGGTAA 2850 0.4274 MSGPLSPKTAPEKTDRVGSLRKKAMSFRNSITRRSRRSSSKVMSIEIEDIHDAEELKAVDEFRQALVLDELLPEKHDDYHMMLRFLKARKFDIEKSKQMWSDMLQWRKEFGADTIIEDFEFKELDEVLQYYPQGNHGVDKDGRPVYIERLGQVDVTKLMQVTTMDRYVKYHVREFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELVTRLQNIDGNNYPETLNRMFIINAGSGFRMLWNSIKSFLDPKTTSKIHVLSNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDPEIIRMVQNGEHKCSRKWELPVVEEKTTTCEENQTSTLEANLTSQLSSVIAQAPATKAYNYDDFVPAADKTARKKVDDNDTFALSKVGVESYAMADSCKIHEKVNSQIFSGVMAFVMGIVTMVRMTRNMPKKLTDADFYSNSAYKGSQKVSSDQMTTNPAISAQEFMTVMKRMAELEEKVINMNQNACMPPEKEEMLNAAITRADALEQELMATKKALEDSLATQQELSAYIEKKKKKKKLSVCASQNRRNYCQKIKFLDKNNLGLMQELLPAHLTDQEATSNTIHAMSETSTTQNSHRVQSLCWAKSGRNFDVSLCWTISSNIGDVPHTTWLGGIKSFLDPKTTSKIHVLSNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDPEIIRMVQNGEHKCSRKWELPVVEEKTTTCEENQTSTLEANLTSQLSSVIAQAPATKAYNYDDFVPAADKTARKKVDDNDTFALSKVGVESYAMADSCKIHEKVNSQIFSGVMAFVMGIVTMVRMTRNMPKKLTDADFYSNSAYKGSQKVSSDQMTTNPAISAQEFMTVMKRMAELEEKVINMNQNACMPPEKEEMLNAAITRADALEQELMATKKALEDSLATQQELSAYIEKKKKKKKLFAW* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1259 949 Gene3D - 111 322 IPR036865 -
Lan17g1259 949 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 633 946 - -
Lan17g1259 949 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 2 552 - -
Lan17g1259 949 Pfam CRAL/TRIO, N-terminal domain 74 102 IPR011074 -
Lan17g1259 949 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 633 946 - -
Lan17g1259 949 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 552 - -
Lan17g1259 949 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 647 691 IPR001251 -
Lan17g1259 949 Coils Coil 902 929 - -
Lan17g1259 949 Coils Coil 508 535 - -
Lan17g1259 949 Gene3D - 633 723 IPR036865 -
Lan17g1259 949 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 123 297 IPR001251 -
Lan17g1259 949 SUPERFAMILY CRAL/TRIO N-terminal domain 52 119 IPR036273 -
Lan17g1259 949 SUPERFAMILY CRAL/TRIO domain 646 713 IPR036865 -
Lan17g1259 949 SUPERFAMILY CRAL/TRIO domain 123 319 IPR036865 -
Lan17g1259 949 CDD SEC14 647 686 IPR001251 -
Lan17g1259 949 SMART CRAL_TRIO_N_2 78 103 IPR011074 -
Lan17g1259 949 Gene3D - 35 110 - -
Lan17g1259 949 CDD SEC14 124 292 IPR001251 -
Lan17g1259 949 SMART sec14_4 123 294 IPR001251 -
Lan17g1259 949 SMART sec14_4 543 688 IPR001251 -
Lan17g1259 949 Pfam CRAL/TRIO domain 129 291 IPR001251 -
Lan17g1259 949 Pfam CRAL/TRIO domain 647 685 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1259 Lan-Chr17 20898188 20908705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1259 57 288 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 1.32e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1259 - - lang:109330964 1840.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1472 6 21570595 21577015 Lan17g1259 17 20898188 20908705 LSH