Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0685 ATGTCTATCACCCAAAACCTCACTGCCACTTCAATCTCTTCTTCTTCCTCTTCTTTTTTTGCCCCATCTACCTTCAATTCTAGGAATCAGGTTTCATTGCCTGTGAAAAGCGTGGGAATTTGCAAATGTGTTGCGGCACCCCAACAAGCTGAGACTGCCTACAAGACAAAGGTCTCTCGCAATGGAAATATAGCTAAACTTCAAGCTGGCTATCTCTTTCCGGAGATTGCTAGAAGGCGGAACGCACACTTGCTGAAGTTCCCTGATGCAAAAATAATAAGCCTTGGAATTGGTGATACTACTGAACCCATTCCTGAAGTCATAACTTCGGCAATGTCAAAGAGATCATATGCATTGTCAACCTTGGAAGGATATAGTGGTTATGGAGCTGAGCAAGGTGAAAAGCCATTAAGAAGCGCAATTGCTTCAACATTTTACAATGATCTTGGCATAGATGATGATGATATATTTGTCTCAGATGGAGCAAAATGTGATATATCTCGCCTTCAGATTGTCTTTGGGTCAAATGTAAAAATGGCCGTGCAAGATCCATCATACCCGGCCTATGTAGACTCGAGTGTAATTATGGGCCAGACTGGCCTCTACCAAAAGGATGTTGAGAAGTTTGCTAACATTGAGTACATGAGGTGTACACCTGAAAATGGTTTCTTCCCTGATTTGTCTTCTATTTCTCGACCAGATATAATTTTTTTCTGTTCACCGAACAATCCTACTGGTGCTGCCGCAACAAGGGAGCAACTGACCCAACTAGTTCAGTTTGCTAAGGACAATGGGTCTATAATAGTCTATGATTCAGCATATGCAATGTACATTACTGGTGACAATCCGCGCTCCATCTTTGAAATTCCAGGAGCCAAAGAGGTTGCCCTTGAGACCTCATCATTTAGCAAGTATGCTGGGTTTACCGGAGTTCGTCTGGGTTGGACTGTGGTTCCAAAGCAGTTGCTTTTTTCTGATGGATTTCCTGTTGCCAAAGACTTCAACCGTATTGTATCTACTTGCTTCAATGGTGCATCCAATATTTCCCAGGCCGGTGGTCTGGCTTGCCTTTCACCAGATGGTCTTAAGGCTATGCGTGATGTTATTGGATTCTACAAAGAAAATACTGACATAATAGTGGAGACATTTGATTCACTTGGTTTCAAAGTCTATGGAGGGGAAAATGCACCATATGTGTGGGTCTATTTCCCTGGTCGAAGCTCATGGGACGTATTCGGTGAGATTCTTGAAAAGACACATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTTAGGGTTAGTGCATTTGGTCACCGGGAAAATGTCTTGGAGGCCTGCAGAAGATTCAGGCAGCTATACAAGTGA 1383 0.4324 MSITQNLTATSISSSSSSFFAPSTFNSRNQVSLPVKSVGICKCVAAPQQAETAYKTKVSRNGNIAKLQAGYLFPEIARRRNAHLLKFPDAKIISLGIGDTTEPIPEVITSAMSKRSYALSTLEGYSGYGAEQGEKPLRSAIASTFYNDLGIDDDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVEKFANIEYMRCTPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSIIVYDSAYAMYITGDNPRSIFEIPGAKEVALETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVSTCFNGASNISQAGGLACLSPDGLKAMRDVIGFYKENTDIIVETFDSLGFKVYGGENAPYVWVYFPGRSSWDVFGEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFRQLYK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0685 460 Hamap LL-diaminopimelate aminotransferase [dapL]. 59 458 IPR019942 GO:0008483
Lan6g0685 460 Gene3D Aspartate Aminotransferase, domain 1 72 455 IPR015422 GO:0003824
Lan6g0685 460 CDD AAT_like 93 457 - -
Lan6g0685 460 PANTHER AMINOTRANSFERASE 10 460 IPR019942 GO:0008483
Lan6g0685 460 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g0685 460 Pfam Aminotransferase class I and II 91 455 IPR004839 GO:0009058|GO:0030170
Lan6g0685 460 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 59 457 IPR019942 GO:0008483
Lan6g0685 460 Gene3D - 102 359 IPR015421 GO:0003824
Lan6g0685 460 SUPERFAMILY PLP-dependent transferases 71 455 IPR015424 -
Lan6g0685 460 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 10 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0685 Lan-Chr6 6058725 6064465 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0685 K10206 - gmx:100801405 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0665 17 5766400 5772691 Lan6g0685 6 6058725 6064465 LSH
Lan18g0609 18 11157153 11163863 Lan6g0685 6 6058725 6064465 LSH