Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0609 ATGTCTGTCACCCAAAACCTCACTGCCATTTCAATCTCTTCCTCATCCTCTGCTTTCTTTGCTCCTTCTACCTTCAATTCTAGGAGCCATGTTTCATTGCCTGTGAAAAGCGTTGGAATTTGCAAATGTGTTGCGGTACCTCAAGAAGCTGAGACTGCTCACAAGACAAAGGTATCTCGCAATGAAAATATTTCTAAACTCCAAGCTGGCTATCTCTTTCCAGAGATCGCTAGAAGGAAGAATGCACACTTGCTGAAGTTTCCTGATGCAAAAATAATAAGCCTTGGTATTGGTGATACTACAGAACCCATTCCTGAAGTCATAACTTCTGCAATGGCAAAGAGATCGTATGCACTGTCAACCTTGGAAGGATACAGTGGTTATGGAGCTGAGCAAGGTGAAAAGCCTTTAAGAAGCGCAATTGCTTCAACATTTTACAAGGATCTTGGCATAGACGATGATGATATATTTGTATCAGATGGAGCAAAATGCGATATATCTCGCCTTCAGATTGTCTTTGGATCAAATGTAAAAATGGCTGTGCAAGACCCATCATATCCGGCCTATGTAGACTCAAGTGTGATTATGGGCCAGACTGGCTTCTATCAAAAGGATGTTGAGAAGTTTGCAAACATCGAGTACATGAGGTGTAAACCTGAAAATGGTTTCTTCCCTGATTTGTCTTCTATTTCTCGACCAGATATAATTTTTTTCTGTTCACCAAACAATCCTACTGGTGCTGCTGCAACGAGGGATCAACTGACCCAACTGGTTCAGTTTGCCAAGGACAATGGGTCTATAATTGTCTATGATTCAGCATATGCAATGTACATTTCTGGTGACAATCCGCGCTCCATCTTCGAAATTCCCGGAGCCAAAGAGGTTGCCCTCGAGACTGCGTCATTTAGCAAGTATGCTGGCTTCACTGGAGTTCGATTGGGTTGGACTGTGGTTCCAAAGCAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAAAGACTTCAACCGTATTGTGTCTACTTGCTTCAATGGCGCCTCGAATATTTCCCAGGCCGGTGGTCTGGCTTGCCTTTCGCCAGAAGGTCTTAAGGCTATGCGAGATGTTATTGGATTCTACAAGGAAAATACTGACATAATAGTGGAAACATTTGAGTCACTTGGTTTCAAAGTCTATGGAGGGGAAAATGCACCATACGTGTGGGTCTATTTCCCGGGTCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCATGTGGTCATAACTCCCGGTAGTGGTTTCGGACCTGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAATGTCTTGGAGGCCTGCAGAAGATTCAAGCAGCTATACAAGTGA 1383 0.4375 MSVTQNLTAISISSSSSAFFAPSTFNSRSHVSLPVKSVGICKCVAVPQEAETAHKTKVSRNENISKLQAGYLFPEIARRKNAHLLKFPDAKIISLGIGDTTEPIPEVITSAMAKRSYALSTLEGYSGYGAEQGEKPLRSAIASTFYKDLGIDDDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGFYQKDVEKFANIEYMRCKPENGFFPDLSSISRPDIIFFCSPNNPTGAAATRDQLTQLVQFAKDNGSIIVYDSAYAMYISGDNPRSIFEIPGAKEVALETASFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVSTCFNGASNISQAGGLACLSPEGLKAMRDVIGFYKENTDIIVETFESLGFKVYGGENAPYVWVYFPGRSSWDVFSEILEKTHVVITPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0609 460 CDD AAT_like 93 457 - -
Lan18g0609 460 Gene3D - 102 359 IPR015421 GO:0003824
Lan18g0609 460 Pfam Aminotransferase class I and II 91 455 IPR004839 GO:0009058|GO:0030170
Lan18g0609 460 Gene3D Aspartate Aminotransferase, domain 1 72 456 IPR015422 GO:0003824
Lan18g0609 460 Hamap LL-diaminopimelate aminotransferase [dapL]. 59 458 IPR019942 GO:0008483
Lan18g0609 460 PANTHER AMINOTRANSFERASE 11 460 IPR019942 GO:0008483
Lan18g0609 460 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 11 460 - -
Lan18g0609 460 SUPERFAMILY PLP-dependent transferases 59 456 IPR015424 -
Lan18g0609 460 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 59 457 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0609 Lan-Chr18 11157153 11163863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0609 K10206 - gmx:100801405 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0609 18 11157153 11163863 Lan18g0609 18 11157153 11163863 ECH
Lan17g0665 17 5766400 5772691 Lan18g0609 18 11157153 11163863 LSH
Lan18g0609 18 11157153 11163863 Lan6g0685 6 6058725 6064465 LSH