Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0475 ATGGATCATAACTTACGTTGTTTTGGGACAACACCCAAAACTCATAATCTATTTTCTCTTATTTTCTTCTTCTTCTTCTTCAGTTTCAGTAACGCAGCCTTCGACCTCGCCACCATACCCTTCAGCGACGGATATTCTTTACTCTTCGGAGGTTCCAACGTTGTCCGCACCGCCGATGACAACGGCGTTAAACTCCTACTCGATCGCTATACAGGTTCTGGTTTTATTTCCTCCAACATGTACCGGTATGGATTCTTCAGTGCAAATATCAAGTTGCCGTCGAATTATACTGCTGGTGTGTGCGTTGCCTTTTATACATCCAACGGTGATGTGTTTCAGAAAAGCCACGATGAGTTGGACTTCGAATTCTTAGGTAACGTCGCCGGTAAACCATGGCAGTTTCAAACAAACTTGTACGGCAACGGTAGCACCAACCGTGGCCGAGAGGAGCGTTACCGCTTATGGTTCGACCCAACCAAAGAATACCATAGATACAGCATCCTATGGACAGCCAAAAACGTCATATTTTACATTGATGATGTTCCAATTAGAGAAGTGTTACGAAGTGTTGAGATGGGAGGTGATTATCCGTCTAAGCCAATGTCATTATATGCTACCATATGGGATGCTTCAAATTGGGCCACATCAGGTGGAAGATACAAGGCTAATTATAAGTATGCACCTTTTATAGCTGAATTCAAGGACCTAGTTCTCAAAGGTTGTCCCGTTAATCCCATCCAAGAAGTTTCTGATGACAAAGCTTGTGCCGACCAACACATTGATCTAGAAGCTCAAGAATATGCCACAATGACCCCTATGCGTCGACGTGCTATGCATAAGTTCCGAAAGCATTTCATGTATTACTCGTATTGCTATGATACATTAAGGTATCCTACACTAATGCCTGAGTGTAATATTATACCCGCGGAGCAGGAAAGGTTTATGGAGACCGGAAGGTTGAGATCCAGTGGCAGCCGCCGCCGGCAGGCTAGGCGAAAGAGTCGTACTAAAACTCTGGTGGATGTTACCAATAAGGGTTATATGTAA 1047 0.4403 MDHNLRCFGTTPKTHNLFSLIFFFFFFSFSNAAFDLATIPFSDGYSLLFGGSNVVRTADDNGVKLLLDRYTGSGFISSNMYRYGFFSANIKLPSNYTAGVCVAFYTSNGDVFQKSHDELDFEFLGNVAGKPWQFQTNLYGNGSTNRGREERYRLWFDPTKEYHRYSILWTAKNVIFYIDDVPIREVLRSVEMGGDYPSKPMSLYATIWDASNWATSGGRYKANYKYAPFIAEFKDLVLKGCPVNPIQEVSDDKACADQHIDLEAQEYATMTPMRRRAMHKFRKHFMYYSYCYDTLRYPTLMPECNIIPAEQERFMETGRLRSSGSRRRQARRKSRTKTLVDVTNKGYM* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0475 348 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 304 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lan6g0475 348 MobiDBLite consensus disorder prediction 317 348 - -
Lan6g0475 348 ProSitePatterns Glycosyl hydrolases family 16 active sites. 118 128 IPR008263 GO:0004553|GO:0005975
Lan6g0475 348 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 305 IPR013320 -
Lan6g0475 348 CDD GH16_XET 37 304 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lan6g0475 348 Pfam Glycosyl hydrolases family 16 45 225 IPR000757 GO:0004553|GO:0005975
Lan6g0475 348 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 32 233 IPR000757 GO:0004553|GO:0005975
Lan6g0475 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 327 - -
Lan6g0475 348 Gene3D - 28 304 - -
Lan6g0475 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 327 IPR044791 GO:0004553
Lan6g0475 348 PIRSF EndGlu_transf 10 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0475 Lan-Chr6 3927069 3931035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0475 15 326 Glycoside Hydrolase AT1G32170 65.705 1.54e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0475 K08235 - gmx:100786236 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0515 17 4004444 4008142 Lan6g0475 6 3927069 3931035 LSH
Lan18g0790 18 13364796 13368717 Lan6g0475 6 3927069 3931035 LSH