Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0515 ATGGATCATAGTTTACGTTGTTTTCTAACAACAACACCAAAAACTCATTTTCTCTTATCACTTTCTCTACTTTTCTTCATCTTCTTCAGTTTTAGCGACGCAGCTTTCGACCTCGCCACCATACCCTTCAACGACGGTTTTTCTCCGCTCTTCGGAGATGCCAACGTTGTTCGAACCTCCGATGATAACGGAGTTAAACTCCTCCTCGATCGATATACAGGTTCGGGCTTTATTTCCTCGAATATGTATCAGTATGGATTCTTCAGTGCAAATATCAAGTTGCCATCGAATTATACTGCAGGTGTTTGCATCGCCTTTTATACATCAAACGGAGATGTGTTTGAGAAAAGCCACGATGAGTTAGACTTTGAATTTTTAGGTAACATCGCCGGAAAACCATGGCGGTTCCAGACAAACTTGTACGGCAACGGTAGCACCCACCGCGGCAGGGAGGAGCGGTACCGATTATGGTTCGACCCAACCAAAGAATACCATAGATATAGCATCCTTTGGACAGCCAAGAATATCATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGTTAAGAAGTGAGAAAATGGGAGCTGATTACCCATCAAAGCCAATGTCATTATATGCTACCATATGGGATGCATCAAATTGGGCCACCTCTGGTGGAAGATATAAAGTTAACTATAAATATGCACCTTTTGTAGTCGAATTCAAGGACCTAGTTCTCAAGGGTTGCTATGTTGGTCCTATTCAAGAAGTCTCTCATGGAGAGGCTTGTGTTAACCAGCATGCCGATCTAGAAGCTCAAGGCTATGCAACCATGACCCACCTGCGCCGCCACGCCATGCGTAGGTTTCGGCAACGTTTCATGTACTACTCTTATTGCTATGATACATTAAGGTACTCAGTGTCACCACCCGAGTGTAATATTATACCAGCGGAGCAACAAAGGTTTAAAGATACCGGAAGGTTGAGATTTGGTGGCAGCCACCGCCGTCAAACTAGGCGGAGGGGTCGCACTACAACTCCAATAGATGATACTGATCATGGTGATACGTGA 1053 0.4387 MDHSLRCFLTTTPKTHFLLSLSLLFFIFFSFSDAAFDLATIPFNDGFSPLFGDANVVRTSDDNGVKLLLDRYTGSGFISSNMYQYGFFSANIKLPSNYTAGVCIAFYTSNGDVFEKSHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEYHRYSILWTAKNIIFYIDEVPIREVLRSEKMGADYPSKPMSLYATIWDASNWATSGGRYKVNYKYAPFVVEFKDLVLKGCYVGPIQEVSHGEACVNQHADLEAQGYATMTHLRRHAMRRFRQRFMYYSYCYDTLRYSVSPPECNIIPAEQQRFKDTGRLRFGGSHRRQTRRRGRTTTPIDDTDHGDT* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0515 350 CDD GH16_XET 39 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lan17g0515 350 PIRSF EndGlu_transf 10 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lan17g0515 350 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 269 306 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lan17g0515 350 Gene3D - 31 306 - -
Lan17g0515 350 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 25 329 IPR044791 GO:0004553
Lan17g0515 350 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 25 329 - -
Lan17g0515 350 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 34 235 IPR000757 GO:0004553|GO:0005975
Lan17g0515 350 MobiDBLite consensus disorder prediction 336 350 - -
Lan17g0515 350 SUPERFAMILY Concanavalin A-like lectins/glucanases 43 307 IPR013320 -
Lan17g0515 350 MobiDBLite consensus disorder prediction 319 350 - -
Lan17g0515 350 ProSitePatterns Glycosyl hydrolases family 16 active sites. 120 130 IPR008263 GO:0004553|GO:0005975
Lan17g0515 350 Pfam Glycosyl hydrolases family 16 54 227 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0515 Lan-Chr17 4004444 4008142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0515 23 328 Glycoside Hydrolase AT1G32170 69.281 1.19e-161 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0515 K08235 - gmx:100786236 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0515 17 4004444 4008142 Lan18g0790 18 13364796 13368717 LSH
Lan17g0515 17 4004444 4008142 Lan6g0475 6 3927069 3931035 LSH