Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1123 ATGGTTTACGCCATTTCTGGTATTCGATTCCCCGTTGTTCCTTCTTCGCTTCATAAACCGTCGCAATCGAGCTTCCATGGAGATCGAAGCACAACTTCATCTCTCTCATTCTTCCTCAACAGGAACTACTCCTTCTCTCTGAAAACCCTTTCTGTAAAAGTTTCCGGTGATTCTGACTCCACATCTTCCACAATTGCTGAATATGATAAAGTACTTATTCCTGAAGACCAAGAGAACTCTTCGTCCTCGACAGATCAACTTGAAACTCCTGACATAACATCAGAGGATCCAGAGTCTGTTCAGAATTTAGATGATTTAATCTTGGAAGATGAGAACAAGTACAATGACGATGAAGCGGCTAGCAGTTACGTAGAGGATGAGGATGTGCAAGGTTCTATTGTGTCATCACTTGTAGAGGTTGACACACATACCCAAGCTGAGACGACATCAGTATCAGTAGACAGAAAATTAAAAATAGAAAGTGATGAAGTGAAACCAAACATCATTCCCCCACCTGGCACTGGGAAGAAAATATACGAGATTGATCCATTTTTGCAACCTCACCGTGAACATCTTGATTTCCGTTATGCACAGTACAAAAGAGTGCGTGCGGAAATTGACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGTTTCACGCGCAGTGCTACAGGCATTACTTATAGAGAGTGGGCACCAGGAGCTAAGACAGCAGCATTAATCGGAGATTTCAACGGTTGGAATCCAAATGTAGATGAAATGGTTCAGAATGAGTTTGGTGTATGGGAGATCTTCCTGCCAAACAATGTGGATGGTTCACCAGCAATTCCTCATGGTTCTCGAGTCAAGATTCGTATGACTACTCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATCAAGTTCTCTGTACAGGCTCCTGGTGAAATTCCATATAACGGAATATACTATGATCCACCAGAAGAGGAACAACATGTCTTCAAATATTCGCAGCCAAAGAGACCAAAGTCACTTAGAATATATGAGTCACATGTTGGAATGAGTAGTCCTGAGCCAAAAATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGTATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCCATCCAAGAACATTCATATTATGCTAGCTTTGGGTACCATGTTACAAATTTCTTTGCTCCCAGCAGCCGATTTGGAACTCCAGACGAACTTAAGTCTCTAATTGACAGAGCTCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACATAGCCATGCATCAAGTAATACATTGGATGGGCTGAATTTGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGTGGTTATCACTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTACTAAGGTATTTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGATGGGTTTAGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGATTGGAGGTAACTTTTACAGGAAATTACAACGAGTATTTTGGTTTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGTTAATGATCTCATTCATGGGCTCTTCCCTGAGGCTGTTACAATTGGTGAAGATGTCAGTGGAATGCCGGCATTCTGCATTCCTACACAAGATGGTGGAATTGGCTTTGATTATCGCCTGCACATGGCCATTGCCGACAAGTGGATTGAGCTCCTCAAGAAGCAAGATGAAGACTGGAGAATGGGTGATATAATCCACACACTCACCAACAGAAGGTGGCAGGAAAAATGTGTAGCTTATGCTGAAAGTCATGATCAAGCATTAGTTGGCGACAAGACAATTGCATTTTGGTTGATGGACAAAGATATGTATGAGTTCATGGCTTTAGACAGACCATCTACTCCTCTTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATCACCATGGGACTCGGTGGTGAAGGGTATTTGAATTTTATGGGAAATGAATTCGGCCATCCTGAGTGGATTGACTTTCCAAGAGGTGATCAACATCTTCCTAATGGCTCAGTAATTCCTGGGAATAATAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAAAATATCTAAGATATCGGGGGATGCAGGAATTTGATCAAGCCATGCAGCACCTAGAAGAAAGCGTTAATTTCATGACTTCTGAGCAGCAATATATTTCACGGAAAGATGAAGGTGACAGAGTTATAGTCTTTGAAAGAGGCAACCTTGTATTTGTCTTCAACTTTCATTGGACCAACAGCTATTCAGATTACAGAATTGGCTGCTTATACCCAGGGAAATATAAGATCGTCTTGGATTCCGATGATGCCAAGTTTGGTGGTTTCAATAGGCTCGACCACACTGCTGAGTACTTCACCTCTGATGGATGGTATGATGACCGACCACGATCCTTTCTCGTGTATGCACCTTGTAGAACAGCAGTGGTGTACGCTCTTGCGGATAAAGTTGAACCAGTTCCAGCCAAACCCTGA 2598 0.4199 MVYAISGIRFPVVPSSLHKPSQSSFHGDRSTTSSLSFFLNRNYSFSLKTLSVKVSGDSDSTSSTIAEYDKVLIPEDQENSSSSTDQLETPDITSEDPESVQNLDDLILEDENKYNDDEAASSYVEDEDVQGSIVSSLVEVDTHTQAETTSVSVDRKLKIESDEVKPNIIPPPGTGKKIYEIDPFLQPHREHLDFRYAQYKRVRAEIDKYEGGLDAFSRGYEKFGFTRSATGITYREWAPGAKTAALIGDFNGWNPNVDEMVQNEFGVWEIFLPNNVDGSPAIPHGSRVKIRMTTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEQHVFKYSQPKRPKSLRIYESHVGMSSPEPKINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDELKSLIDRAHELGLLVLMDIVHSHASSNTLDGLNLFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLEVTFTGNYNEYFGFATDVDAVVYLMLVNDLIHGLFPEAVTIGEDVSGMPAFCIPTQDGGIGFDYRLHMAIADKWIELLKKQDEDWRMGDIIHTLTNRRWQEKCVAYAESHDQALVGDKTIAFWLMDKDMYEFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGSVIPGNNNSYDKCRRRFDLGDAKYLRYRGMQEFDQAMQHLEESVNFMTSEQQYISRKDEGDRVIVFERGNLVFVFNFHWTNSYSDYRIGCLYPGKYKIVLDSDDAKFGGFNRLDHTAEYFTSDGWYDDRPRSFLVYAPCRTAVVYALADKVEPVPAKP* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1123 865 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 14 857 IPR037439 GO:0003844|GO:0005978
Lan5g1123 865 SUPERFAMILY (Trans)glycosidases 336 749 IPR017853 -
Lan5g1123 865 Coils Coil 737 757 - -
Lan5g1123 865 MobiDBLite consensus disorder prediction 75 100 - -
Lan5g1123 865 Gene3D Immunoglobulins 218 330 IPR013783 -
Lan5g1123 865 SUPERFAMILY Glycosyl hydrolase domain 757 855 - -
Lan5g1123 865 PIRSF GlgB 110 862 IPR037439 GO:0003844|GO:0005978
Lan5g1123 865 Pfam Alpha amylase, catalytic domain 371 442 IPR006047 GO:0005975
Lan5g1123 865 SMART aamy 361 721 IPR006047 GO:0005975
Lan5g1123 865 CDD E_set_GBE_euk_N 230 323 - -
Lan5g1123 865 MobiDBLite consensus disorder prediction 68 100 - -
Lan5g1123 865 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 222 305 IPR004193 GO:0004553|GO:0005975
Lan5g1123 865 Pfam Alpha amylase, C-terminal all-beta domain 760 853 IPR006048 GO:0003824|GO:0005975|GO:0043169
Lan5g1123 865 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 14 857 - -
Lan5g1123 865 CDD AmyAc_bac_euk_BE 327 742 - -
Lan5g1123 865 SUPERFAMILY E set domains 216 325 IPR014756 -
Lan5g1123 865 Gene3D Glycosidases 182 750 - -
Lan5g1123 865 Gene3D - 756 860 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1123 Lan-Chr5 24578690 24593659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1123 20 856 Glycoside Hydrolase AT5G03650 74.791 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1123 K00700 - gmx:100785968 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1123 5 24578690 24593659 Lan5g1123 5 24578690 24593659 ECH
Lan5g1123 5 24578690 24593659 Lan19g0397 19 4988930 5011391 LSH