Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0397 ATGGTTTACACCATCTCAGGAATTCGATTCCCCGTTGTTCCTTCTTCGGTTCATAAACCGTCGCAACCGAGCTTCTTCCATGGCGATCGCACCAGAGGTGCTTCTCTCTCATTATTTCTCAACAAGAGTAAATCCTTCTCTCCAGGGAAAACCTTTGCTGTAAAAGTTTCCCGTGATTCTGATTCTACATCTTCCACAATTGCTGAATCTGATAAAGTACTTATTCCTCAAGACCAGGATAACTCTGAATCCTTGACAGACCAACATGAAACTCCTGATATAATCTCAGAGGGTCCAGAGTCTGTTCATGATGAAGAGGATTTAACCTTGGAAGATGAGAACAAACATAATGACAATGAAGCAGCTAGCAGTTACAGAGAGGATGAGGATGTGGAAGGTTCTTTTGTGTCATCACTTGTAGATGTTGACGCCCATGCTCAAGCTGAGACGACATCAGTATCAATAGTCAGAAAAGTAAAAATAGAAAGTGATGAAGTGAAACCAAAAATCATTCCCCCACCTGGCACTGGGAAGAAAATATACGAAATTGATCCATTTTTGCAAGCTCACAGTGAACATCTTGATTTCCGTTATGAACAATACAAAAGACTGCGTGAGAAAATTGACAAGTATGAAGGCGGCCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGCTTCACACGCAGTGCGACAGGCATTACTTATAGAGAGTGGGCACCTGGAGCTAAGGCAGCAGCATTAATCGGAGACTTCAACGGTTGGAATCCAAATGTAGATGAAATGGTTCGGAATGAGTTTGGTGTATGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCAGCAATTCCCCATGGTTCTCGAGTCAAGATCCGTATGACTACTCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATTAAGTTCTCTGTACAGGCTCCTGGTGAAATTCCATATAACGGAGTATACTATGATCCACCAGAAGAGGAAAAATATGTCATCAAACATCCACAGCCAAAGAGACCAAAATCACTTAGAATATATGAATCACATGTTGGAATGAGTAGTCCGGAGCCAAAAATAAACACATATGCCAATTTTAGAGATGACGTACTACCTCGTATTAAAAAGCTTGGCTATAATGCTGTCCAGATTATGGCCATCCAAGAACATTCTTACTATGCTAGCTTTGGGTACCATGTTACAAATTTCTTTGCCCCCAGCAGCCGATTTGGAACTCCAGACGAACTTAAGTCTCTAATTGACAGAGCTCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACATAGCCATGCATCAAGTAATACATTGGATGGGCTCAACTTGTTTGATGGAACTGATAGTCATTACTTCCATCCTGGGTCACGCGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGATGGGTTTAGATTTGATGGAGTCACATCAATGATGTACACTCATCATGGGTTGGAGGTAACTTTCACTGGAAATTACAATGAGTATTTTGGTTTTGCAACTGATGTTGATGCTGTAGCTTACCTAATGCTGGTTAATGATCTTATTCATGGGCTCTTCCCTGAGGCTGTTACTATCGGTGAAGATGTCAGTGGAATGCCGGCATTCTGCATTCCTACACAAGATGGTGGAATTGGCTTTGATTATCGCCTGCACATGGCTATTGCTGACAAGTGGATTGAGCTTCTCAAGAAGCAAGACGAAGACTGGAGAATGGGAGATATAATTCACACGCTCACAAACAGGAGGTGGGGGGAAAAATGTGTTGCTTATGCTGAAAGTCATGATCAAGCGTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGACCATCTACTCCTCTTATAGACCGTGGTATAGCATTACACAAAATGATTAGGCTTATCACCATGGGCCTTGGTGGTGAAGGGTATTTGAATTTTATGGGAAATGAATTTGGCCATCCTGAGTGGATTGACTTTCCAAGGGGTGATCAACATCTTCCTAATGGCTCAGTAGTTCCTGGGAACAATAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAGAATTTCTAAGATATCGGGGGATGCAAGAATTTGATCAAGCTTTGCAGCACCTAGAAGAAAGCTTTGATTTCATGACGTCTGAGAACCAATATATTTCACGGAAAGATGAAAGTGACAGAGTTATAGTCTTTGAAAGAGGCAACCTTGTCTTTGTATTCAACTTTCATTGGACCAACAGCTATTCAGATTACAAAATTGGCTGCTTTTACCCAGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGTGGCTTCAATAGGCTCGATCACACTGCTGAGTACTTCACCTCTGATGGATGGTATGATGACAGACCACGATCTTTTCTTGTGTATGCACCTTCTAGAACAGCAGTGGTGTACGCACTCGCTGATAAAGTTGAACCAGTGCTAGTCACACCATGA 2604 0.4186 MVYTISGIRFPVVPSSVHKPSQPSFFHGDRTRGASLSLFLNKSKSFSPGKTFAVKVSRDSDSTSSTIAESDKVLIPQDQDNSESLTDQHETPDIISEGPESVHDEEDLTLEDENKHNDNEAASSYREDEDVEGSFVSSLVDVDAHAQAETTSVSIVRKVKIESDEVKPKIIPPPGTGKKIYEIDPFLQAHSEHLDFRYEQYKRLREKIDKYEGGLDAFSRGYEKFGFTRSATGITYREWAPGAKAAALIGDFNGWNPNVDEMVRNEFGVWEIFLPNNVDGSPAIPHGSRVKIRMTTPSGIKDSIPAWIKFSVQAPGEIPYNGVYYDPPEEEKYVIKHPQPKRPKSLRIYESHVGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDELKSLIDRAHELGLLVLMDIVHSHASSNTLDGLNLFDGTDSHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLEVTFTGNYNEYFGFATDVDAVAYLMLVNDLIHGLFPEAVTIGEDVSGMPAFCIPTQDGGIGFDYRLHMAIADKWIELLKKQDEDWRMGDIIHTLTNRRWGEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGSVVPGNNNSYDKCRRRFDLGDAEFLRYRGMQEFDQALQHLEESFDFMTSENQYISRKDESDRVIVFERGNLVFVFNFHWTNSYSDYKIGCFYPGKYKIVLDSDDALFGGFNRLDHTAEYFTSDGWYDDRPRSFLVYAPSRTAVVYALADKVEPVLVTP* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0397 867 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 14 859 - -
Lan19g0397 867 SUPERFAMILY E set domains 218 327 IPR014756 -
Lan19g0397 867 SUPERFAMILY Glycosyl hydrolase domain 759 857 - -
Lan19g0397 867 MobiDBLite consensus disorder prediction 58 130 - -
Lan19g0397 867 CDD AmyAc_bac_euk_BE 329 744 - -
Lan19g0397 867 Gene3D Immunoglobulins 220 332 IPR013783 -
Lan19g0397 867 SUPERFAMILY (Trans)glycosidases 337 753 IPR017853 -
Lan19g0397 867 MobiDBLite consensus disorder prediction 93 130 - -
Lan19g0397 867 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 14 859 IPR037439 GO:0003844|GO:0005978
Lan19g0397 867 Gene3D Glycosidases 184 753 - -
Lan19g0397 867 PIRSF GlgB 99 863 IPR037439 GO:0003844|GO:0005978
Lan19g0397 867 Pfam Alpha amylase, catalytic domain 373 444 IPR006047 GO:0005975
Lan19g0397 867 MobiDBLite consensus disorder prediction 58 82 - -
Lan19g0397 867 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 224 307 IPR004193 GO:0004553|GO:0005975
Lan19g0397 867 Pfam Alpha amylase, C-terminal all-beta domain 762 855 IPR006048 GO:0003824|GO:0005975|GO:0043169
Lan19g0397 867 Gene3D - 758 863 IPR013780 -
Lan19g0397 867 SMART aamy 363 723 IPR006047 GO:0005975
Lan19g0397 867 CDD E_set_GBE_euk_N 232 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0397 Lan-Chr19 4988930 5011391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0397 20 858 Glycoside Hydrolase AT5G03650 75.209 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0397 K00700 - gmx:100785968 1511.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1123 5 24578690 24593659 Lan19g0397 19 4988930 5011391 LSH