Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1096 ATGGAAGCTTTACATTTCTCTACCGTTGCATCCCGCCATTTCTCCATTTCTCTCTCACACAACCGAACTTTCTCATCTTCTGCTTATTCTACTCACAAACCAACTAAGCTCTCTTCTTCATGGACTGGTTCTTCTTTTTCTTCCTCCAGAAACAACTTGTTCACTAATGAGATATGGGGTTGGGTCAACTCCAAAAGTGTCTCTCTTAGAAGATGCAGAGATATTCTGCCCGGAATGGTACGGGCAGAAATGTTCGGGCAGCTGACCTCTGGGCTTGAGGCTGCATGGAGTAAAGTCAAAGGAGAAGAGCTTTTGACCAAAGAAAACATTGTTGAGCCTATGCGTGATATCAGGAGAGCTCTTTTGGAAGCAGATGTTAGCCTTCCTGTTGTCAGAAGGTTTGTGCAAGCTGTCACCGATCAGGCTGTGGGTCTCGGTGTGATTCGAGGAGTTAGACCAGATCAGCAATTGGTTAAGATTGTACACGATGAACTAGTAAAACTGATGGGTGGAGAGTTCTCTGAACTGGTTTTTGCTAAATCTGGACCCACTGTCATTTTATTGGCTGGGCTACAAGGAGTTGGGAAGACTACTGTTTGTGCGAAATTGGCAAATTATCTCAAGAAACAGGGGAAAAGTTGCATGCTAGTTGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAACTTGCTATTTTGGGTAAACAGGTGGATGTGCCTGTCTATACAGCAGGCACTGATGTTAAACCGTCTGAAATCGCTAGACAAGGTTTAGAAGAGGCAAAAAAGAAGAACATTGATGTGGTGGTTGTTGACACTGCTGGTAGGCTGCAGATAAACAAATCAATGATGGATGAGTTAAAAGAAGTGAAGCAGGTATTGAATCCTACCGAAATTTTACTAGTTGTGGATGCAATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGCGCCATCTTATCAAAACTAGATGGTGACTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTGGTAGGACGGGGGGAGCGCATGGAAGATCTTGAACCTTTCTACCCTGATCGAATGGCTGGACGCATATTAGGAATGGGAGATGTTCTTTCGTTTGTAGAGAAGTCGAAAGAAGTTATGCAACAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTTCTGTTGCACGAATGGGTTCTGTGTCTCGTGTCATTGGAATGATTCCTGGGATGGCGAAGGTCACTCCTGCTCAAATTCGAGACGCAGAGAAGAATTTGCAGATAACGGAAGCAATGATTGAAGCGATGACCCCTGAGGAGAGGGAAAAGCCGGAACTGTTGGCAGAATCACCTGAAAGGAGGAAAAGAGTTGCTCAGGATTCCGGGAAAACGGAGCAGCAGGTAAGCCAACTTGTCGCTCAAATCTTCCAAATGCGTGTTCGTATGAAGAATCTGCTCGGTGTAATGGAAGGTGGATCAATGCCAGCCCTAAGTAATCTCGAGGAATCACTTAAAACAGAAGAAAAGGCTCCACCTGGTACCGCAAGAAGGAGGAGGAGACCGGAATCAAGGAAACAGTTCGCGAATTCAACATCGGCAAGACCAGATGCGCGTGGTTTTGCAAGCGAAAGTTAA 1716 0.4487 MEALHFSTVASRHFSISLSHNRTFSSSAYSTHKPTKLSSSWTGSSFSSSRNNLFTNEIWGWVNSKSVSLRRCRDILPGMVRAEMFGQLTSGLEAAWSKVKGEELLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVTDQAVGLGVIRGVRPDQQLVKIVHDELVKLMGGEFSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIARQGLEEAKKKNIDVVVVDTAGRLQINKSMMDELKEVKQVLNPTEILLVVDAMTGQEAAALVTTFNLEIGITGAILSKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKSKEVMQQEDAEELQKKIMSAKFDFNDFLKQTRSVARMGSVSRVIGMIPGMAKVTPAQIRDAEKNLQITEAMIEAMTPEEREKPELLAESPERRKRVAQDSGKTEQQVSQLVAQIFQMRVRMKNLLGVMEGGSMPALSNLEESLKTEEKAPPGTARRRRRPESRKQFANSTSARPDARGFASES* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1096 571 SMART AAA_5 182 329 IPR003593 -
Lan5g1096 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 436 IPR027417 -
Lan5g1096 571 Gene3D - 173 367 IPR027417 -
Lan5g1096 571 PANTHER BNAC02G02820D PROTEIN 58 552 - -
Lan5g1096 571 Pfam Signal peptide binding domain 409 507 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lan5g1096 571 MobiDBLite consensus disorder prediction 524 571 - -
Lan5g1096 571 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 351 364 IPR000897 GO:0005525|GO:0006614
Lan5g1096 571 Gene3D - 87 388 IPR042101 -
Lan5g1096 571 SUPERFAMILY Signal peptide-binding domain 409 510 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lan5g1096 571 SMART SRP54_N_2 84 169 IPR013822 GO:0005525|GO:0006614
Lan5g1096 571 SMART SRP54_3 183 378 IPR000897 GO:0005525|GO:0006614
Lan5g1096 571 Hamap Signal recognition particle 54 kDa protein [srp54]. 88 525 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lan5g1096 571 MobiDBLite consensus disorder prediction 463 495 - -
Lan5g1096 571 MobiDBLite consensus disorder prediction 463 488 - -
Lan5g1096 571 Pfam SRP54-type protein, GTPase domain 183 378 IPR000897 GO:0005525|GO:0006614
Lan5g1096 571 Pfam SRP54-type protein, helical bundle domain 88 165 IPR013822 GO:0005525|GO:0006614
Lan5g1096 571 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 58 552 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lan5g1096 571 CDD SRP_G 184 376 - -
Lan5g1096 571 Gene3D - 389 512 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lan5g1096 571 MobiDBLite consensus disorder prediction 529 544 - -
Lan5g1096 571 TIGRFAM ffh: signal recognition particle protein 86 510 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1096 Lan-Chr5 24256150 24261388 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1096 K03106 - tcc:18598256 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1096 5 24256150 24261388 Lan5g1096 5 24256150 24261388 ECH
Lan5g1096 5 24256150 24261388 Lan19g0374 19 4593652 4599281 LSH