Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0374 ATGGAAGCCATACACTTCTCTACCGTTTCCTCTCGCCATTTCTCCACTTCTCTCTCACACAACCGAACCTTCTCCTCTTCTTCTTCTGCCAAACTAACCAATCTCTCTTCTCCATGGAAAAGTTCTTCTATTTCTTCTTCCAGAAACAACTTGTTCACGAATGAGGTATGGGGTTGGGTCAAGTCCAAAAATGTCTCTTTCAGAAGAAAGAAGATTCTGCCCGGATTGATACGGGCAGAAATGTTCGGGCAGTTAACCAATGGTCTTGAGTCTGCTTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACCAAAGAGAATATTTTGGAGCCTATGCGAGATATTAGGAGAGCTCTCTTGGAAGCAGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGGAAGAAGTCACCGATCAGGCTGTGGGTGTCGGTGTAATTCGAGGAGTTAAACCAGATCAGCAATTGGTGAAGATTGTACATGACGAACTAGTAAAAATGATGGGTGGAGAGTTCTCTGAACTGGTTTTTGCCGAAACTGGGCCAACTGTCATTTTATTGGCAGGGCTACAGGGAGTTGGGAAGACGACTGTTTGTGCTAAGTTGGCAAATTATCTCAAGAAACAGGGGAAAAGTTGCATGCTAGTCGCGGGGGATGTTTACAGACCAGCTGCTATTGACCAACTTGCTATTTTGGGTAAAAAGGTGGGTGTGCCGGTCTATACAGCAGGTACTGATGTTAAACCTGCTGAAATTGCTAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAACATTGATGTGGTTGTTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCAATGATGGATGAGTTAAAAGAAGTGAAGCGGGTATTGAATCCAACAGAAACTTTGCTGGTTGTGGATGCAATGACCGGGCAAGAAGCAGCAGGTTTGGTGTCTAGTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTAGATGGCGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCGGGAAAGCCAATTAAGCTTGTAGGACGGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGATCGAATGGCTGGACGTATACTGGGAATGGGAGATGTTCTTTCGTTTGTAGAGAAGGCAAAAGAAGTTATGCAACAAGAAGATGCCGAAGAACTGCAAAAGAAGATCACGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTGCTGTTGCACGAATGGGCTCTGTGTCTCGTGTGATTGGAATGATTCCTGGTATGGGGAAGGTCACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATCTGAAGATAATGGAGGCAATGATAGATAAAATGACCCCTGAGGAAAGGGAAACGCCAGAACTGTTGGCAGAATCACCTTTCAGGAGGAAAAGGGTTGCTAAGGATTCAGGGAAAACGGAACAGCAGGTAAGCCAACTCGTAGCTCAACTCTTCCAAATGCGTGTTCGTATGAAGAAACTGATGGGTGTAATGGAAGGTGGATCAATGCCAACTCTTAGTAATCTACAGGAAGCGCTTAAAACAGATGAAAAGGCTCCATCTGGTACATCAAGGAGGAAGAAGAAATCAGAATCGAGGAAACAATTCACGGACTCAACATCAACAAGACCAGCTCCGCGTGGTTTTGGGAGCAAAAGTTAG 1707 0.4441 MEAIHFSTVSSRHFSTSLSHNRTFSSSSSAKLTNLSSPWKSSSISSSRNNLFTNEVWGWVKSKNVSFRRKKILPGLIRAEMFGQLTNGLESAWNKLKGEEVLTKENILEPMRDIRRALLEADVSLPVVRRFVEEVTDQAVGVGVIRGVKPDQQLVKIVHDELVKMMGGEFSELVFAETGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKKVGVPVYTAGTDVKPAEIAKQGLEEAKKKNIDVVVVDTAGRLQIDKAMMDELKEVKRVLNPTETLLVVDAMTGQEAAGLVSSFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAKEVMQQEDAEELQKKITSAKFDFNDFLKQTRAVARMGSVSRVIGMIPGMGKVTPAQIREAEKNLKIMEAMIDKMTPEERETPELLAESPFRRKRVAKDSGKTEQQVSQLVAQLFQMRVRMKKLMGVMEGGSMPTLSNLQEALKTDEKAPSGTSRRKKKSESRKQFTDSTSTRPAPRGFGSKS* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0374 568 MobiDBLite consensus disorder prediction 19 42 - -
Lan19g0374 568 Gene3D - 84 385 IPR042101 -
Lan19g0374 568 MobiDBLite consensus disorder prediction 464 486 - -
Lan19g0374 568 CDD SRP_G 181 373 - -
Lan19g0374 568 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 55 566 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lan19g0374 568 MobiDBLite consensus disorder prediction 533 551 - -
Lan19g0374 568 SMART SRP54_N_2 81 166 IPR013822 GO:0005525|GO:0006614
Lan19g0374 568 SMART AAA_5 179 323 IPR003593 -
Lan19g0374 568 Gene3D - 170 364 IPR027417 -
Lan19g0374 568 MobiDBLite consensus disorder prediction 552 568 - -
Lan19g0374 568 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 348 361 IPR000897 GO:0005525|GO:0006614
Lan19g0374 568 Hamap Signal recognition particle 54 kDa protein [srp54]. 85 525 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lan19g0374 568 MobiDBLite consensus disorder prediction 517 568 - -
Lan19g0374 568 MobiDBLite consensus disorder prediction 464 492 - -
Lan19g0374 568 PANTHER BNAC02G02820D PROTEIN 55 566 - -
Lan19g0374 568 Pfam SRP54-type protein, helical bundle domain 85 162 IPR013822 GO:0005525|GO:0006614
Lan19g0374 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 433 IPR027417 -
Lan19g0374 568 SMART SRP54_3 180 375 IPR000897 GO:0005525|GO:0006614
Lan19g0374 568 TIGRFAM ffh: signal recognition particle protein 83 508 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lan19g0374 568 SUPERFAMILY Signal peptide-binding domain 406 507 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lan19g0374 568 Pfam SRP54-type protein, GTPase domain 180 375 IPR000897 GO:0005525|GO:0006614
Lan19g0374 568 Pfam Signal peptide binding domain 406 504 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lan19g0374 568 Gene3D - 386 510 IPR036891 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0374 Lan-Chr19 4593652 4599281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0374 K03106 - tcc:18598256 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1096 5 24256150 24261388 Lan19g0374 19 4593652 4599281 LSH