Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1089 ATGGCAGGGCTGGAAAATAATGGGAGTGAAAGGGAATTAGCAGGAGTTAATGGTTTTCTGCAAGTTTCGGAGACTACTACTAGTGCTACTGGCTCTGCTGGGGATGTTGTTGATGAAGGGGGTAAGACAGACAGTCTTTCTTTTGCCAATATCTTGCGTTCAAGGAACAAGTTTGTCGATGCACTTGCTCTGTATGAGCGTGTCCTAGAGAATGATAGTGGAAATGTTGAGGCCATCATTGGAAAAGGGATATGCCTGCAGATGCAGAGCATGGGAAAACTTGCTTTTGACAGTTTTTCTGAGGCTATTAGGTTGGATCCTCAAAATGCTTGTGCCCTCACGCATTGTGGCATCCTGTTCAAAGAAGAGGGGCGCTTGTTGGAGGCAGCCGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCCTACAAAGCAGCTTCTGAACTCCTTGCCATTGTTTTCACGGATATTGGTACAAACATAAAGCTTGCAGGAAACTCTCAGGAGGGAATTCAAAAATATTTTGAAGCCATCAAAATAGATCCACATTATGCTCCAGCATACTATAACCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTTACTTTCTATGAAAAGGCTGCAACAGAGAGGCCCATGTATGCTGAAGCATATTGCAATATGGGTGTGATTTTTAAAAATCGTGGTGATTTAGGATCAGCTATTACTTGTTATGAGAGGTGTTTAGCTGTTTCACCTAACTTTGAGATTGCAAAGAACAATATGGCTATAGCTTTGACAGATTTGGGGACAAAGGCTAAATTGGAGGGGGACATCAACCAAGGTGTAGCTTTTTATAAGAAAGCTCTGTGTTATAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTACGGTGAGATGCTCAAGTTTGATATGGCCATTGTATTCTATGAACTTGCATTTCACTTCAATCCACACTGTGCAGAAGCTTGCAACAATCTAGGTGTTATATATAAAGATCGTGACAACCTTGATAAAGCTGTAGAATGTTATCAGCTTGCTTTGTCAGTCAAACCTAACTTCTCACAGTCATTAAATAACCTTGGTGTTGTATACACTGTCCAGGGTAAAATAGATGCTGCTGCAATTATGATTGAGAAAGCTATCACTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGGGTTCTTTATAGGGATGTTGGCGAAATCACTCAAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGGAATGCTAGCCAGAACCGCTTGCTTGCAATGAATTACATAGATGAAGGAAATGATGACAAACTGTTTGAGGCTCACAGGGACTGGGGTAGGCGATTTATGAGATTATATTCACAGTACACTTCTTGGGACAACACAAAAGACCCTGAACGACCTCTTGTAGTCGGATACATATCTCCCGATTATTTCACTCATTCAGTATCATATTTCATAGAAGCTCCCCTTGTCTATCATGACTACACCAAGTATAAAGTGATTGTTTACTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTCTTAAGTAGGGGTGGGATCTGGAAAGATATTTATGGGGCTGATGAAAAGAAGGTTGCTGACATGGTTAGAGAAGATCAAATTGATATTTTGGTAGAACTTACTGGTCATACTGCGAACAATAAGTTGGGAATGATGGCATGTCGACCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTGCAATTGATTATAGAATCACTGATTCATTGGCAGACCCTCCCAAAACAAAACAGAAACATGTTGAGGAGTTAGTTAGATTGCCGGAGTGCTTCCTTTGTTACACTCCTTCCCCAGAGGCTGGTCCTGTTTGTCCAACTCCTGCTCTTTCTAATGGCTTCATCACCTTTGGTAGTTTTAACAATCTTGCAAAGATTACACCTAAAGTATTGCAGGTTTGGGCGAGGATACTATCTGCAGTTCCAAATTCTCGTCTCGTGGTAAAATGTAAACCATTTTGCTGTGATAGTGTGAAACAGAGATTCCTTTCAACATTAGAGCAGTTAGGCATGGAACCCTTACGAGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCATATTCTCTGATGGACATCAGTTTGGACACATTTCCATATGCCGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCTGTGCATGCACACAATGTTGGTGTTAGTCTCCTTAGCAATGTTGGACTCGAGCGTTTGGTTGCCAGAAACGAAGATGAATATGTTAAATTGGCTCTACAGTTGGCATCTGACATTTCAGCACTGCAAAAGTTGAGAATGAGTCTCCGAGATCTCATGTCCAAGTCCCCCGTCTGCGATGGTGCAAATTTCATCCTAGGTCTGGAGTCAACATACCGAAATATGTGGTGCAGGTATTGCAAAGGGGATGCTCCGTCTTTGAAACGCATGGAGTTGTTGGAACAACCAGTTGCTGCTGACCCATCTATTAGCAATTCCGACACAACAAACTCAAGGGATGACAATCCTGGATCTGTCAAAACCAATGGATTTAATGCAATGCAGTCATCTAAGCTTAATATACACAGCCACACAAGTGAAGAAAATGGTGGGTCATTGAATCACATTACTAAACAAGGAAATTCAACTTGA 2763 0.4148 MAGLENNGSERELAGVNGFLQVSETTTSATGSAGDVVDEGGKTDSLSFANILRSRNKFVDALALYERVLENDSGNVEAIIGKGICLQMQSMGKLAFDSFSEAIRLDPQNACALTHCGILFKEEGRLLEAAESYQKALQVDPSYKAASELLAIVFTDIGTNIKLAGNSQEGIQKYFEAIKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAATERPMYAEAYCNMGVIFKNRGDLGSAITCYERCLAVSPNFEIAKNNMAIALTDLGTKAKLEGDINQGVAFYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSVKPNFSQSLNNLGVVYTVQGKIDAAAIMIEKAITANPTYAEAYNNLGVLYRDVGEITQAINAYEQCLKIDPDSRNASQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYSQYTSWDNTKDPERPLVVGYISPDYFTHSVSYFIEAPLVYHDYTKYKVIVYSAVVKADAKTIRFREKVLSRGGIWKDIYGADEKKVADMVREDQIDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLADPPKTKQKHVEELVRLPECFLCYTPSPEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILSAVPNSRLVVKCKPFCCDSVKQRFLSTLEQLGMEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSNVGLERLVARNEDEYVKLALQLASDISALQKLRMSLRDLMSKSPVCDGANFILGLESTYRNMWCRYCKGDAPSLKRMELLEQPVAADPSISNSDTTNSRDDNPGSVKTNGFNAMQSSKLNIHSHTSEENGGSLNHITKQGNST* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1089 920 Pfam Tetratricopeptide repeat 396 428 IPR001440 GO:0005515
Lan5g1089 920 Pfam Tetratricopeptide repeat 328 361 IPR001440 GO:0005515
Lan5g1089 920 MobiDBLite consensus disorder prediction 863 920 - -
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 396 429 IPR019734 GO:0005515
Lan5g1089 920 SMART sel1 328 359 IPR006597 -
Lan5g1089 920 SMART sel1 185 216 IPR006597 -
Lan5g1089 920 SMART sel1 294 325 IPR006597 -
Lan5g1089 920 SMART tpr_5 185 218 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 219 252 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 294 327 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 396 429 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 110 143 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 260 293 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 42 75 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 151 184 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 76 109 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 362 395 IPR019734 GO:0005515
Lan5g1089 920 SMART tpr_5 328 361 IPR019734 GO:0005515
Lan5g1089 920 Pfam Tetratricopeptide repeat 364 390 - -
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 362 395 IPR019734 GO:0005515
Lan5g1089 920 Gene3D Tetratricopeptide repeat domain 43 153 IPR011990 GO:0005515
Lan5g1089 920 SUPERFAMILY TPR-like 48 268 IPR011990 GO:0005515
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 328 361 IPR019734 GO:0005515
Lan5g1089 920 MobiDBLite consensus disorder prediction 862 920 - -
Lan5g1089 920 SUPERFAMILY TPR-like 365 795 IPR011990 GO:0005515
Lan5g1089 920 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 37 855 - -
Lan5g1089 920 Gene3D - 467 642 - -
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Lan5g1089 920 Pfam Glycosyl transferase family 41 472 632 IPR029489 -
Lan5g1089 920 Pfam Glycosyl transferase family 41 649 827 IPR029489 -
Lan5g1089 920 Gene3D Tetratricopeptide repeat domain 259 466 IPR011990 GO:0005515
Lan5g1089 920 SUPERFAMILY TPR-like 259 432 IPR011990 GO:0005515
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Lan5g1089 920 Pfam Tetratricopeptide repeat 48 110 - -
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
Lan5g1089 920 ProSiteProfiles TPR repeat region circular profile. 396 428 - -
Lan5g1089 920 Pfam Tetratricopeptide repeat 186 249 - -
Lan5g1089 920 Gene3D Glycogen Phosphorylase B; 647 821 - -
Lan5g1089 920 Gene3D Tetratricopeptide repeat domain 154 258 IPR011990 GO:0005515
Lan5g1089 920 ProSiteProfiles TPR repeat region circular profile. 328 360 - -
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Lan5g1089 920 ProSiteProfiles TPR repeat profile. 185 218 IPR019734 GO:0005515
Lan5g1089 920 ProSiteProfiles TPR repeat region circular profile. 185 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1089 Lan-Chr5 24203000 24219190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1089 204 894 Glycosyltransferase AT3G11540 64.993 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1089 K09667 - gmx:100776844 1596.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1089 5 24203000 24219190 Lan5g1089 5 24203000 24219190 ECH
Lan5g1089 5 24203000 24219190 Lan19g0368 19 4525767 4539527 LSH