Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0368 ATGGCAGGGGCGAAAAATAATGGGAGTGAAAGGGAATTAGCAGGAGTTAATGGCTTTCTGCAAGTGTCGGAGGCTTCTATTAGTGCTACTGGCTCCATCAATGTTGTTAATGAAGGGGTAAACAAAGACAGTCTTTCTTTTGCCAACATCCTGCGTTCGAGGAACAAGTTTGTTGATGCACTCGCCCTGTATGAGCGTGTCCTAGAGAATGATAGTGGAAATGTAGAGGCTCTCATTGGAAAAGGAATATGCCTACAGATGCAGAACATGGGAAAGCTTGCTTTCGACAGTTTTTCTGAGGCTATAAGGTTGGATCCTCAAAATGCTTGTGTCCTCACACATTGTGGTATTCTGTTCAAAGAAGAGGGTCGCTTGTTGGAGGCAGCTGAGTCATATCAGAAGGCTTTGCAAGCGGATCCTTCATACAAAGCAGCTGCCGAATGCCTTGCCATTGTTTTAACAGATATCGGTACCAACATAAAGCTTGCAGGAAACACTCAGGATGGAATTCAAAAATATTTTGAAGCCCTCAAAATAGATCCTCACTATGCTCCAGCATATTATAACCTTGGTGTAGTCTATTCTGAAATGATGCAATATGACATGGCCCTTACTTTCTATGAAAAGGCTGCAACAGAGAGGCCTATGTATGCTGAAGCATATTGCAATATGGGTGTGATTTTTAAAAATCGTGGTGATTTGGGAGCAGCTATTACTTGTTATGAGAGGTGTTTAGCTGTTTCACCTAACTTTGAGATTGCAAAGAACAATATGGCTATAGCTTTGACAGATTTGGGGACAAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTTGCTTTTTATAAGAAAGCTTTGTATTATAACTGGCATTATGCTGATGCCATGTATAATCTCGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCTATTGTATTCTATGAACTTGCGTTTCACTTCAATCCACATTGTGCGGAAGCTTGCAACAATCTAGGTGTTATATATAAAGATCGCGACAACCTTGATAAAGCTGTAGAATGTTACCAGCTTGCTTTGTCAATCAAACCTAACTTCTCACAGTCATTAAATAACCTCGGCGTTGTATACACTGTCCAGGGTAAGATGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGCGAGATCACTCAAGCAATTAATGCTTATGAACAATGTCTTAAGATTGATCCCGATTCTCGGAATGCCGGCCAGAACCGCTTGCTTGCAATGAATTACATAGATGAAGGAAAGGATGACAAACTTTTTGAGGCTCACAGGGACTGGGGTAGGCGATTTATGAGATTATATTCACCGTACACTTTGTGGGACAACACAAAAGATCCTGAACGACCTCTTGTAATAGGATATGTATCCCCGGATTATTTTACTCATTCAGTCTCATATTTCATAGAAGCTCCCCTTGTCTATCATGACTACACCAAGTATAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTCTTAAGTAGGGATGGGATCTGGAAAGATATTTATGGGACTGATGAAAAGAAGGTTGCCGACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACTGGTCATACTGCAAACAATAAGTTGGGAATGATGGCATGTCGACCTGCACCAGTTCAGGTAACTTGGATTGGTTATCCCAACACAACAGGATTGCCTGCAATTGATTATAGAATCACTGATTCACTGGCAGACCCTCCCAAAACAAAACAGAAGCATGTTGAGGAGTTAGTTAGATTGCCGGAGAGCTTTCTTTGTTACACCCCTTCCCCTGAGGCCGGTCCTGTTTGTCCAACTCCTGCTCTTTCTAATGGCTTCATCACGTTTGGTAGTTTTAACAATCTTGCTAAGATTACACCTAAAGTATTGAAGGTTTGGGCAAGGATACTATGTGCAATTCCAAATTCTCGTCTTGTGGTAAAATGTAAACCATTTTGCTGTGATAGTGTAAAACAGAGATTCCTTTCAACACTTGAGCAGTTAGGCTTGGAACCGCTACGAGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCATATTCTCTGATGGACATTAGTTTGGACACATTTCCATATGCTGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCTGTTCATGCGCACAATGTCGGTGTTAGTCTCCTTAGCAAAGTTGGACTGGAGCGTTTGGTTGCCAGAAATGAAGATGAATATGTTAAACTGGCTCTGCAGTTGGCCTCTGACGTTTCAGCACTGCAAAATCTGAGAATGAGTCTCCGAGATCTCATGTCCAAGTCCCCCGTCTGTGATGGTGCAAATTTCATCCGAGGTCTGGAGTCAACATACCGGAATATGTGGCGCAGGTATTGTAAAGGAGACATTCCATCTTCAAAACGCATGGCATTATTGGAACAATCAGTTGCTACTACTGCTGACCCATCCATCAAGAATTCCGAGCCAACAAGCTCAAGGGAGGACACTCCTGGATCTGTCAAGACAAATGGATTTAACTCAACGCAATCACCTAAGCTTAACATAATCAGTCGCAAAGAAAATGGCGGGTCATTGGATCACAATAGTAAACAAGGAAGTTCAAGTTGA 2760 0.4159 MAGAKNNGSERELAGVNGFLQVSEASISATGSINVVNEGVNKDSLSFANILRSRNKFVDALALYERVLENDSGNVEALIGKGICLQMQNMGKLAFDSFSEAIRLDPQNACVLTHCGILFKEEGRLLEAAESYQKALQADPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAATERPMYAEAYCNMGVIFKNRGDLGAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAFYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGEITQAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGKDDKLFEAHRDWGRRFMRLYSPYTLWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTKYKVIVYSAVVKADAKTIRFREKVLSRDGIWKDIYGTDEKKVADMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLADPPKTKQKHVEELVRLPESFLCYTPSPEAGPVCPTPALSNGFITFGSFNNLAKITPKVLKVWARILCAIPNSRLVVKCKPFCCDSVKQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLERLVARNEDEYVKLALQLASDVSALQNLRMSLRDLMSKSPVCDGANFIRGLESTYRNMWRRYCKGDIPSSKRMALLEQSVATTADPSIKNSEPTSSREDTPGSVKTNGFNSTQSPKLNIISRKENGGSLDHNSKQGSSS* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0368 919 SMART tpr_5 150 183 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 109 142 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 361 394 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 218 251 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 395 428 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 75 108 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 41 74 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 327 360 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 293 326 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 259 292 IPR019734 GO:0005515
Lan19g0368 919 SMART tpr_5 184 217 IPR019734 GO:0005515
Lan19g0368 919 Gene3D Tetratricopeptide repeat domain 222 263 IPR011990 GO:0005515
Lan19g0368 919 Pfam Tetratricopeptide repeat 363 388 - -
Lan19g0368 919 ProSiteProfiles TPR repeat region circular profile. 327 359 - -
Lan19g0368 919 SUPERFAMILY TPR-like 342 794 IPR011990 GO:0005515
Lan19g0368 919 Pfam Glycosyl transferase family 41 467 631 IPR029489 -
Lan19g0368 919 Pfam Glycosyl transferase family 41 648 827 IPR029489 -
Lan19g0368 919 SMART sel1 293 324 IPR006597 -
Lan19g0368 919 SMART sel1 327 358 IPR006597 -
Lan19g0368 919 SMART sel1 184 215 IPR006597 -
Lan19g0368 919 SUPERFAMILY TPR-like 47 267 IPR011990 GO:0005515
Lan19g0368 919 Pfam Tetratricopeptide repeat 395 427 IPR001440 GO:0005515
Lan19g0368 919 Pfam Tetratricopeptide repeat 327 360 IPR001440 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 109 142 IPR019734 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 361 394 IPR019734 GO:0005515
Lan19g0368 919 Gene3D Tetratricopeptide repeat domain 264 456 IPR011990 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 395 428 IPR019734 GO:0005515
Lan19g0368 919 Pfam Tetratricopeptide repeat 185 248 - -
Lan19g0368 919 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 38 854 - -
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 293 326 IPR019734 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat region circular profile. 395 427 - -
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 218 251 IPR019734 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 327 360 IPR019734 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 75 108 IPR019734 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat region circular profile. 184 215 - -
Lan19g0368 919 SUPERFAMILY TPR-like 258 430 IPR011990 GO:0005515
Lan19g0368 919 MobiDBLite consensus disorder prediction 860 901 - -
Lan19g0368 919 Pfam Tetratricopeptide repeat 47 109 - -
Lan19g0368 919 Gene3D Glycogen Phosphorylase B; 646 820 - -
Lan19g0368 919 MobiDBLite consensus disorder prediction 860 919 - -
Lan19g0368 919 Gene3D Tetratricopeptide repeat domain 42 152 IPR011990 GO:0005515
Lan19g0368 919 Gene3D - 465 641 - -
Lan19g0368 919 Gene3D Tetratricopeptide repeat domain 153 221 IPR011990 GO:0005515
Lan19g0368 919 ProSiteProfiles TPR repeat profile. 184 217 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0368 Lan-Chr19 4525767 4539527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0368 203 898 Glycosyltransferase AT3G11540 63.739 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0368 K09667 - gmx:100776844 1628.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1089 5 24203000 24219190 Lan19g0368 19 4525767 4539527 LSH