Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1052 ATGGAGAATAAAGAAGTGATAATGGGTATTGCTTTGGAGAAATTTACATGGAAGATTGAAACTTTCTCCAAATTCAGCACCAAGAGACTCTCCTCCAAGGCTTTCAAACTTGGTGGTTATAGATGGAAGATTGTTTTATATCCTATGGGTGAGAATGGCAAGAATTTTTCCTTGCAGGTGAAGATTGCTGATTTTATGCCAGCTTATGGATGGAAAATATTTGCATATTTTAGGGTTTCTCTTATTAATCAGTTTCATACCAAGAACTCAATAGCTAAGGAGACCCAACAGAAATTTAATGGAGGAAATAAAAGTTGGAACTCTCCATCATTCATTCCTCTCAATGAATTCTATGACCCAAGTCAAGGTTATCTTGTAAATGATACATGCATCATTGAAGCTCAAATTGCAACCTCTAAGGACATTGCATTTAACATTTTGGACAATGTAGAACTCAATGAACCAGAACATCTAGGAATGGCACCTTTAAGTCCCACAAGTACCCATGAATCTAGAGATGATGTAAGTGAAACAGAAGTGCAACTCTTACATCATGAACATCAAGGAATAGGTCCCTCAGATGAGACTCCAAGTCCTAAACAAGTGCAATTTGTTCCTAGTGCTCCTCCTATGTATCCTAATTTATCTAATGAACATGAAGAAGTGTTCTTAACCCCTCTTGCTGAACTCGTAGATTTCAAGAGTTTAGAGCCAGAGGAGTCAGCTTTTATTCCATTATGGGAAGAGGTATGTTCATGTCACCCTTCACTAGTAGAAAACCAAAGAAAAAGAAGTTCTAGGTTCATATTATGGGCATTCCTAGCTTTGGGTCAAGTTCTACATTTCCTTAAGACTAAGAAGATTAGAGATATGGGGGAAGATGAAACTAAGCACCTTAAGGTTCTATGGGATGAACTACAATCCTTTGGGTTTGATTTGACATGGTTGGAGCCACATGTTCAATCAGCATTGGGTGCAAAAGCTTATTTGGAAAGAGCACATGAAGTCAAAAATCTAAGGGCTAAAGTAGCTACTTTAGATATTGAAATGAGGAAGTTGAAGGCAAAATTGGCTGTTGAAGAAATTGACCTTGAGGTTACAAGGAGACACTTGGCAAAAGCAGAGAATGGTTTTGAAGAGAGGGACATGGATGTTGTACTAGGTTATGGAATACCTTAG 1179 0.3783 MENKEVIMGIALEKFTWKIETFSKFSTKRLSSKAFKLGGYRWKIVLYPMGENGKNFSLQVKIADFMPAYGWKIFAYFRVSLINQFHTKNSIAKETQQKFNGGNKSWNSPSFIPLNEFYDPSQGYLVNDTCIIEAQIATSKDIAFNILDNVELNEPEHLGMAPLSPTSTHESRDDVSETEVQLLHHEHQGIGPSDETPSPKQVQFVPSAPPMYPNLSNEHEEVFLTPLAELVDFKSLEPEESAFIPLWEEVCSCHPSLVENQRKRSSRFILWAFLALGQVLHFLKTKKIRDMGEDETKHLKVLWDELQSFGFDLTWLEPHVQSALGAKAYLERAHEVKNLRAKVATLDIEMRKLKAKLAVEEIDLEVTRRHLAKAENGFEERDMDVVLGYGIP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1052 392 CDD MATH 14 136 IPR002083 GO:0005515
Lan5g1052 392 Pfam MATH domain 19 136 IPR002083 GO:0005515
Lan5g1052 392 ProSiteProfiles MATH/TRAF domain profile. 12 136 IPR002083 GO:0005515
Lan5g1052 392 MobiDBLite consensus disorder prediction 157 179 - -
Lan5g1052 392 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 13 374 - -
Lan5g1052 392 Coils Coil 336 356 - -
Lan5g1052 392 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 143 IPR008974 GO:0005515
Lan5g1052 392 SUPERFAMILY TRAF domain-like 14 141 - -
Lan5g1052 392 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 13 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1052 Lan-Chr5 23866884 23869690 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1052 - - gmx:102668441 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0345 9 5260593 5263336 Lan5g1052 5 23866884 23869690 LSH