Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1048 ATGCGTAGAATCACAAATATGAGACCTAATATCGTTTCTGAGGCAGGGGTGTCTACTAGGTTGAATCAGTGGTGGGAAAACATTCCATTTCTCACTTCTGCTGTGGTGGTTGTTTGTGGTATTATTTATGTGGTTTGTCTTTTGGTTGGATATGATTCCTTCACAGAGGTTTGCTTCTTGCCCTCTGCTGTTATATCTTGGTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTCCATGGTTCTATGCTTCATGTTTTCTTCAACATGACGGCTTTGATTCCCATGGGATCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTCACCATTTTGTTGGCTACAAGCAATGCGTTATTCCATGTTCTCATAGCACTGCTGGTGGCACACAATCCTATTCACCCGTATGAGAACCTCATGTATGAGTGTGCAATAGGCTTCTCTGGAGTTCTTTTTTCGATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCCAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCTAAGTGGTATGCATTCTTTTTGTTGGTAGTGTTTCAGCTTCTCATGCAAAACGTCTCACTACTTGGACACCTCTGTGGCATCTTATCTGGGTTTGCATATACACATGGCTTGTTTAATTTCCTCATACCCAGGACATCTTTTTATTCATCCATTGAATCCTCCTCCTGGCTTTCGTCGTGCGTGAGACGTCCCAAATTTATTGTTTGTACTGGCGGAAATCTTTCTAGTTATATCCCTACACATACAAGCGAAAATTCAACATCCAGTGGAATACTTCCGGGAAATATCTGGAGGAACCTATCATCATTTATGCCTCAAAGGGGAGTGTCTGCTCAGACAAATGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTCGGTGCTAGTCAAGGTCAAATGGCTTCTCATCTTCATTCAGATTCAAATCTTCATGCTAGCCTCTTGGACAATAGCAGTCCCAATCATCCTTTAGAATCCACTCTCGGTACCAACCGAAAACTATCAGGAGGAAGGCATTCAGCTGATAATGTACCAACAGCAACTGCAGTTGTTCCACCACCTCAGGGTGCAATTGCTTCAGAAGAAGGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCACTTGCAGCTGCTGATGGCGATGTTAATGTTGCAGTGGAAATACTCATGAGCCAACAGGATTAA 1242 0.4332 MRRITNMRPNIVSEAGVSTRLNQWWENIPFLTSAVVVVCGIIYVVCLLVGYDSFTEVCFLPSAVISWFQVYRIYTSILFHGSMLHVFFNMTALIPMGSELERIMGSVRLLYVTILLATSNALFHVLIALLVAHNPIHPYENLMYECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTHGLFNFLIPRTSFYSSIESSSWLSSCVRRPKFIVCTGGNLSSYIPTHTSENSTSSGILPGNIWRNLSSFMPQRGVSAQTNEDSRFPGRGRTLGASQGQMASHLHSDSNLHASLLDNSSPNHPLESTLGTNRKLSGGRHSADNVPTATAVVPPPQGAIASEEGIKKLVSMGFDRTQVEVALAAADGDVNVAVEILMSQQD* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1048 413 SMART uba_6 373 410 IPR015940 -
Lan5g1048 413 CDD UBA_At3g58460_like 374 409 - -
Lan5g1048 413 SUPERFAMILY UBA-like 367 412 IPR009060 GO:0005515
Lan5g1048 413 MobiDBLite consensus disorder prediction 308 350 - -
Lan5g1048 413 PANTHER DER1-LIKE PROTEIN, DERLIN 10 412 - -
Lan5g1048 413 Pfam UBA/TS-N domain 375 408 IPR015940 -
Lan5g1048 413 Pfam Rhomboid family 68 219 IPR022764 GO:0004252|GO:0016021
Lan5g1048 413 PANTHER RHOMBOID-LIKE PROTEIN 15 10 412 - -
Lan5g1048 413 Gene3D - 22 218 IPR035952 -
Lan5g1048 413 SUPERFAMILY Rhomboid-like 25 221 IPR035952 -
Lan5g1048 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 371 411 IPR015940 -
Lan5g1048 413 MobiDBLite consensus disorder prediction 289 357 - -
Lan5g1048 413 Gene3D - 347 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1048 Lan-Chr5 23783795 23789708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1048 - - gmx:100805745 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1048 5 23783795 23789708 Lan5g1048 5 23783795 23789708 ECH
Lan5g1048 5 23783795 23789708 Lan19g0327 19 3948917 3955424 LSH