Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0327 ATGAGACCTGATATCGTTACCGAGGCAGGGTTGTCTACTAGAGTAAATCAGTGGTGGGAAAACATTCCATTCCTCACTTCTGCTGTGGTGGTTGTTTGTGGAATTATTTACTTGGTTTGTCTTTTGGTTGGATATGATTCCTTCGCCGAGGTTTGCTTCTTGCCGTCTGCTGTTATATCTCGGTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTCCATGGTTCATTGCTTCATGTTTTCTTTAACATGATGGCTTTGGTTCCCATGGGGTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGTTATATGTCACTATTTTGTTGGCTACAAGCAATGCAATATTCCATGTTTTCATTGCACTGCTGGTGGCGTACAATCCTATTCAACCCTATGAGAACCTCATGAATGAGTGTGCAATAGGCTTCTCTGGAGTTCTATTTTCGATGATTGTTATAGAGACAAGTCTGAGTGGAGCTCAATCCAGGAGCGTGTTTGGATTGTTTAATGTGCCTGCTAAGTGGTATCCGTTCCTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAACGTCTCACTACTTGGACACCTTTGTGGCATCTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCCAGGACATCTTTTTATTCTTCCATTGAATCCACCTCCTGGCTTTCATCGTGCGTGAGACGTCCCAAATTTATTGTTTGTACTGGCGGAAATCCTTCTGGTTATATCCCTACACACACAAGCGAAAATTCAACATCCAGTGGAATTCTTCCGGGAAATATCTGGAGAAACCTATCATCATTTATGCCTCAAAGGGAAGTGTCTGCTCAGCCAAATGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTGCTGGTCAAGGTCAAATCGCTTCTGATCTTCATTCAGATTCAAATCTTCAAGCTAGACTCTTGGACAATAGCAGTCCCAATCATCCTTTAGATTCACCCACTCTTAGCACTACCCAACAATTATCAGGTGGAAGGCATTCGGCTGATAATGCAGCAACAGCGACTGCAGTTGTTCCACCGCATCAGGGTGCAGTTGCTTCAGAAGAAGAAATTAAAAAACTTGTATCAATGGGGTTTGATAGGATCCAGGTGGAAGTGGCACTTGCAGCTGCTGATGGCGATCTTAATGTTGCAGTGGAAATACTCATGAGCCAACAGGATTAA 1227 0.4352 MRPDIVTEAGLSTRVNQWWENIPFLTSAVVVVCGIIYLVCLLVGYDSFAEVCFLPSAVISRFQVYRIYTSILFHGSLLHVFFNMMALVPMGSELERIMGSVRLLYVTILLATSNAIFHVFIALLVAYNPIQPYENLMNECAIGFSGVLFSMIVIETSLSGAQSRSVFGLFNVPAKWYPFLLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPRTSFYSSIESTSWLSSCVRRPKFIVCTGGNPSGYIPTHTSENSTSSGILPGNIWRNLSSFMPQREVSAQPNEDSRFPGRGRTLGAGQGQIASDLHSDSNLQARLLDNSSPNHPLDSPTLSTTQQLSGGRHSADNAATATAVVPPHQGAVASEEEIKKLVSMGFDRIQVEVALAAADGDLNVAVEILMSQQD* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0327 408 MobiDBLite consensus disorder prediction 320 350 - -
Lan19g0327 408 SMART uba_6 368 405 IPR015940 -
Lan19g0327 408 Gene3D - 16 213 IPR035952 -
Lan19g0327 408 CDD UBA_At3g58460_like 369 404 - -
Lan19g0327 408 SUPERFAMILY Rhomboid-like 19 216 IPR035952 -
Lan19g0327 408 SUPERFAMILY UBA-like 361 407 IPR009060 GO:0005515
Lan19g0327 408 MobiDBLite consensus disorder prediction 281 308 - -
Lan19g0327 408 PANTHER RHOMBOID-LIKE PROTEIN 15 4 407 - -
Lan19g0327 408 SMART DUF1751_2 55 157 - -
Lan19g0327 408 Pfam Rhomboid family 60 213 IPR022764 GO:0004252|GO:0016021
Lan19g0327 408 PANTHER DER1-LIKE PROTEIN, DERLIN 4 407 - -
Lan19g0327 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 406 IPR015940 -
Lan19g0327 408 Gene3D - 339 408 - -
Lan19g0327 408 MobiDBLite consensus disorder prediction 320 351 - -
Lan19g0327 408 Pfam UBA/TS-N domain 369 403 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0327 Lan-Chr19 3948917 3955424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0327 - - gmx:100798661 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1048 5 23783795 23789708 Lan19g0327 19 3948917 3955424 LSH