Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0976 ATGAAGCTCATCAACAGCCTCAACCCCAAGAAATTGAAACTCAGTCCAAAACGGTTATTCCGTTCAAAGAAAAACCGTTCCACTGTTTCAAGATCCGATCCACCTTCATTCGGGTCCGGATCCTTATCCTCTTCCTCTGAAGGCTCCATACATAAGACGGAAACCGGAGCAACCGGTTCCCAAACTCCGACAAGTGTTCTCCCCGACGTTTCTGACGAGTGGACAGCCATCTCCGGCGACCTCCACTTCGACCTCTCCAACGCCTTCCGTTTCATAGACCGCGACAACGACGGCGTCGTTTCGCGGAACGAGCTCGAGGCGCTGTTGACTCGGCTCACGGCGGCGCCAGAAGTGGCGATGATGCTGAGCGAGGTGGAGTTCGACGGGGAAGGGTGTATAACGGTTGAGGCGTTGATGAACCGAGTTGGATTCGGTTCCGGGTCGGTTGAGAGTCCGGATGAGTTGATGGAGGCTTTCGCCGTCTTCGACACCGATCACGACGGGAGGATCTCGGCGGAGGAGTTGTTAAGGGTTTTTCAGGCGATCGGAGATGAGCGGTGCACGTTAGAGGAGTGTCGGCGCATGATAGAGAGTGTTGATAGAAACGGGGATGGGTTTGTGTGCTTCGCGGACTTTTCGCGTATGATGGAGTTGCAGCGATGA 663 0.5475 MKLINSLNPKKLKLSPKRLFRSKKNRSTVSRSDPPSFGSGSLSSSSEGSIHKTETGATGSQTPTSVLPDVSDEWTAISGDLHFDLSNAFRFIDRDNDGVVSRNELEALLTRLTAAPEVAMMLSEVEFDGEGCITVEALMNRVGFGSGSVESPDELMEAFAVFDTDHDGRISAEELLRVFQAIGDERCTLEECRRMIESVDRNGDGFVCFADFSRMMELQR* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0976 220 ProSiteProfiles EF-hand calcium-binding domain profile. 187 220 IPR002048 GO:0005509
Lan5g0976 220 MobiDBLite consensus disorder prediction 1 67 - -
Lan5g0976 220 SUPERFAMILY EF-hand 74 217 IPR011992 -
Lan5g0976 220 Pfam EF hand 88 108 IPR002048 GO:0005509
Lan5g0976 220 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lan5g0976 220 Pfam EF-hand domain pair 154 216 IPR002048 GO:0005509
Lan5g0976 220 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Lan5g0976 220 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Lan5g0976 220 CDD EFh 154 216 IPR002048 GO:0005509
Lan5g0976 220 SMART efh_1 84 112 IPR002048 GO:0005509
Lan5g0976 220 SMART efh_1 191 219 IPR002048 GO:0005509
Lan5g0976 220 SMART efh_1 154 182 IPR002048 GO:0005509
Lan5g0976 220 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lan5g0976 220 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Lan5g0976 220 Gene3D - 145 220 - -
Lan5g0976 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 218 - -
Lan5g0976 220 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 1 218 - -
Lan5g0976 220 MobiDBLite consensus disorder prediction 29 67 - -
Lan5g0976 220 Gene3D - 80 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0976 Lan-Chr5 23015916 23016822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0976 10 220 EF-hand Containing Proteins AT3G10190 49.767 2.55e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0976 K13448 - gmx:100790734 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0976 5 23015916 23016822 Lan5g0976 5 23015916 23016822 ECH
Lan5g0976 5 23015916 23016822 Lan19g0252 19 2815360 2816269 LSH