Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0252 ATGAAGCTCATCAATAAACTCAGTCCAAAACGGTTCTTCCGTTCAAAGAAAGACCGTTCCACTGTTTCAAGATCCGACCCGCCATCATTCGGTTCAGAATCTTTATCTTCTTCTTCTGAGGGGTCCACTCATAAGACGGCAACCGGAGCAACCGGTTCTCAAACTCCGACCAGTGTTCTTCCTGACGTTTCCGGCGACTGGACCGCCATCTCCGGCGACCTCCACTCCGATCTTGCTAACGCCTTCCGCTTCATCGACCGCGATAGGGACGGTGTAATTTCACGGCACGAGCTTGAGGCGTTGTTAAATCGGCTCGCGGCAGCGCCGGAGGAGGTGGCAATGATGCTGAGCGAGGTTGAGTTCGACGGGGAAGGGTGCATAACCGTGGAGGCGCTGATGAATCGGGTTGGATCGGGTTCCGGGTCGTGTGAAAACGCGGATGAGATGATGGAGGCTTTCGCGGTGTTCGACACCGATCGTGACGGGAGGATCTCGGCGGAGGAGTTGTTTAGAGTTTTTGAGGCGATCGGAGATGAGAGGTGCACGTTAGCGGAGTGCAGGCGCATGATAGAGAGTGTTGATAGAAAAGGAGATGGGTTCGTGTGCTTTGAGGACTTTTCGCGTATGATGGAGTTGCAGCGATGA 645 0.5411 MKLINKLSPKRFFRSKKDRSTVSRSDPPSFGSESLSSSSEGSTHKTATGATGSQTPTSVLPDVSGDWTAISGDLHSDLANAFRFIDRDRDGVISRHELEALLNRLAAAPEEVAMMLSEVEFDGEGCITVEALMNRVGSGSGSCENADEMMEAFAVFDTDRDGRISAEELFRVFEAIGDERCTLAECRRMIESVDRKGDGFVCFEDFSRMMELQR* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0252 214 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Lan19g0252 214 CDD EFh 148 210 IPR002048 GO:0005509
Lan19g0252 214 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 212 - -
Lan19g0252 214 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Lan19g0252 214 SMART efh_1 111 139 IPR002048 GO:0005509
Lan19g0252 214 SMART efh_1 148 176 IPR002048 GO:0005509
Lan19g0252 214 SMART efh_1 185 213 IPR002048 GO:0005509
Lan19g0252 214 SMART efh_1 77 105 IPR002048 GO:0005509
Lan19g0252 214 MobiDBLite consensus disorder prediction 1 60 - -
Lan19g0252 214 MobiDBLite consensus disorder prediction 24 60 - -
Lan19g0252 214 Pfam EF-hand domain pair 148 210 IPR002048 GO:0005509
Lan19g0252 214 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 4 212 - -
Lan19g0252 214 ProSiteProfiles EF-hand calcium-binding domain profile. 144 179 IPR002048 GO:0005509
Lan19g0252 214 Pfam EF hand 81 101 IPR002048 GO:0005509
Lan19g0252 214 Gene3D - 74 134 - -
Lan19g0252 214 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Lan19g0252 214 ProSiteProfiles EF-hand calcium-binding domain profile. 181 214 IPR002048 GO:0005509
Lan19g0252 214 Gene3D - 135 214 - -
Lan19g0252 214 SUPERFAMILY EF-hand 66 210 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0252 Lan-Chr19 2815360 2816269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0252 1 214 EF-hand Containing Proteins AT3G10190 50.691 1.53e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0252 K13448 - gmx:100790734 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0976 5 23015916 23016822 Lan19g0252 19 2815360 2816269 LSH