Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0647 ATGTTTCGAATTCTTTTGCTCCTCTCTCTTTTCTTATCTACTTCTCATGCTTCAGATTTCTGTGTTGCAGACCTAAAGGGTGTAAAAAGCCCTGCAGGTTATCCCTGCAAGTCACATGTCACTGTTGATGACTTTGTATTTTCTGGCTTTAGAGCTGGAAATACCTCAAACGTGTTCAAAGCTGCACTCACCCCAGCATTTGTTGATGAATTTCCAGGTGTTAATGGCCTTGGCTTCTCTGCAGCACGTTTAGATTTAGATATTGGTGGTATAATCCCAATGCACTCTCATCCTGGTGGCTCTGAGTTGCTAATAATGGTTTCTGGTCAGATCACTGCTGGATTTGTAGCATCAGATAATTCAGTTTTTCTTAAGACCCTTTCAAAGGGAGATCTTATGATTTTTCCACAAGGATTGTTGCATTTTCAACTAAATGCTGGTAATACAAAGGCCACAGCTATTTTTGCTTACAGTAGCACGAATCCTGGTGCACAACTCCTTGATCTTGCATTGTTTGGAAACAACTTAGATTCTACGTTGGTGCAAAAGTCTACCTTCCTTGATGCTGCCCAAGTGAAGAAGCTTAAGGGTGCTTTTGGTGGTTCTTATTAA 612 0.4085 MFRILLLLSLFLSTSHASDFCVADLKGVKSPAGYPCKSHVTVDDFVFSGFRAGNTSNVFKAALTPAFVDEFPGVNGLGFSAARLDLDIGGIIPMHSHPGGSELLIMVSGQITAGFVASDNSVFLKTLSKGDLMIFPQGLLHFQLNAGNTKATAIFAYSSTNPGAQLLDLALFGNNLDSTLVQKSTFLDAAQVKKLKGAFGGSY* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0647 203 PRINTS Germin signature 95 115 IPR001929 GO:0030145
Lan5g0647 203 PRINTS Germin signature 125 145 IPR001929 GO:0030145
Lan5g0647 203 PRINTS Germin signature 158 173 IPR001929 GO:0030145
Lan5g0647 203 CDD cupin_OxOx 18 199 - -
Lan5g0647 203 SMART Cupin_1_3 48 193 IPR006045 -
Lan5g0647 203 ProSitePatterns Germin family signature. 90 103 IPR019780 GO:0030145
Lan5g0647 203 SUPERFAMILY RmlC-like cupins 17 202 IPR011051 -
Lan5g0647 203 Pfam Cupin 51 193 IPR006045 -
Lan5g0647 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 200 - -
Lan5g0647 203 Gene3D Jelly Rolls 14 203 IPR014710 -
Lan5g0647 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0647 Lan-Chr5 14659423 14660215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0647 1 202 Miscellaneous Gene Families AT1G72610 57.488 1.55e-78 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0647 - - lja:Lj3g3v2590370.1 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0647 5 14659423 14660215 Lan2g0484 2 5635963 5636877 LSH