Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0484 ATGCAACTAGCTAATCCCACATTCCCACCCAACAACACAAAAAATCATACAACAAAAATGCTTCACATTCTTCTCCTCCTCCTTCCTCTTCTCTTATCCATTTCCAATGCTTCTGTCAATGATTTCTGTGTAGCAGACCTTAATGGTCCAGATGGTCCTTCAGGCTATCCCTGCAAGCCTCCTACAAAAGTAACCACACATGACTTCGTATATGCTGGCTTAGCTGCTTCAGGAAACACCACAAACATTATCAATGCTGCTGTAACACCTGCATTTGTTGCTCAATTCCCAGGTCTAAATGGCCTTGGTCTTTCTGCAGCAAGGTTAGACATTGCTTCTGGTGGTGTAATCCCTCTTCATACTCACCCTGGTGCTTCTGAGTTATTGATAGTAACACAAGGTCGTGTCACTGCTGGGTTTATAACATCAGATAATTCAGTTTATGTGAAGACACTTTCAAAGGGAGAACTTTTCATTTTGCCACAAGGGTTGTTGCATTTTCAATTAGGTTATGGTAAGAGAAAAGCTGTTGCTTATGCTGTTTTCAGTAGCTCAAGTCCAGGGCTTCAAATACTTGATTTTGCATTGTTTGCAAGCAACTTTTCTTCTTCTTTGATTACACAGACTACTTTCCTTGACCCTGAACAAGTGAAGAAGCTTAAGAGTGTTCTTGGTGGTAGTGGCTAG 687 0.4134 MQLANPTFPPNNTKNHTTKMLHILLLLLPLLLSISNASVNDFCVADLNGPDGPSGYPCKPPTKVTTHDFVYAGLAASGNTTNIINAAVTPAFVAQFPGLNGLGLSAARLDIASGGVIPLHTHPGASELLIVTQGRVTAGFITSDNSVYVKTLSKGELFILPQGLLHFQLGYGKRKAVAYAVFSSSSPGLQILDFALFASNFSSSLITQTTFLDPEQVKKLKSVLGGSG* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0484 228 PRINTS Germin signature 120 140 IPR001929 GO:0030145
Lan2g0484 228 PRINTS Germin signature 150 170 IPR001929 GO:0030145
Lan2g0484 228 PRINTS Germin signature 183 198 IPR001929 GO:0030145
Lan2g0484 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 224 - -
Lan2g0484 228 CDD cupin_OxOx 35 224 - -
Lan2g0484 228 Gene3D Jelly Rolls 36 227 IPR014710 -
Lan2g0484 228 SUPERFAMILY RmlC-like cupins 38 222 IPR011051 -
Lan2g0484 228 Pfam Cupin 74 218 IPR006045 -
Lan2g0484 228 SMART Cupin_1_3 72 218 IPR006045 -
Lan2g0484 228 ProSitePatterns Germin family signature. 115 128 IPR019780 GO:0030145
Lan2g0484 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 24 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0484 Lan-Chr2 5635963 5636877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0484 19 227 Miscellaneous Gene Families AT5G20630 60.287 1.59e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0484 - - gmx:100816355 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0647 5 14659423 14660215 Lan2g0484 2 5635963 5636877 LSH