Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0535 ATGGAGTTCGATACTCATGTTACCACTGTTACTAACAATGACAAACCCGAGTCGGGAGCATTTCCGAATAAGCGTCAGAGAAAAAAGTCTATGGTGTGGGAATACTTCACAGTGCAAAGTGTTGGAGCTGGTATTACCAGGGCTTATTGCAAACAGTGCAAGAAATCATTTGCTTATATCAGTGGTTCAAAACTATCTGGTACTAGCCATCTGAAAAGACACATTACCTTGGGAATCTGTCAAGTACTTCGTCAGAAAAATGAACAAAGCTTATATTGTAATACTGATGCTTCTCGAGATAGTGCTAATCGACCAAAGAAACGGACGAGAGCAGCATCTGGGTATGCTGGTAATGGTAGCCTTTTTGATCAGGAGCGTTGCAACCATGACATTGCTAAAATGATAATTTTACACGATTATCCACTACATATGGTGGAGCAGCAGGGTTTCATTAATTTTGTTCGGACTCTTCAACCTCAGTTCAATCCTTTATGTTTAAATTCTGTTGAAGCAAATTGTGTTTCTATATTCCATAGAAAGAAGCTAAACATGTTGAATCTTATCAAGGGTATTCTTGCACAAGTCAACCTCTCATTGGACTTATGGACTTCAAACCAGGCAACACGCTATGTTTTTGTTCGAGGACACTTCATTGATGGTGACTGGAACATGCATCATCCCATCCTCAAGGTTATTACAGTACCGTTTTCTGATTGTGATGATTCCTTAAAGCAAGGTGTAGTGACCTGCTTATCTGATTGGCATTTGGATGGTCGATTGTTCACCGTTGCATTTGATAAATCCTTCTCAAGTGAGACTATGATTGGAAATCTGAGAGGTCTTCTTTCTTTCAAGAGCCCTTTGATCCTCAATGGTCAGTTATTAAACCAGAATTGTTATGCTCGTGTTCTTAGTCGCCTTGCAGTAGACACATTATGTTCATTAAGAGAAACTATTGGCAAAGTGCGTGAGAGTGTGAAGTTTGTAAATTCTTCAGATTCTCATAAAAATAAGTTTTTTGAGCTGAAGCAACAATTGCAAGTCCCTAGCATGGTGGACCTTTTGATCGATGATGAGAGTAAATGGAACACAACTTATCATATGCTTGCTGCTGCCTGTGAGTTAAAAGAAGTCTTTACATGCTTTGATGCTTTTGATCCTGATTACAAAACGATTATAACAATGAGTGATTGGAAGAAGGTTCAAACTCTCTGCACATATTTGAAGATTTTGTATGATGCAGCTAACATTTTAACTGGCAAACTATATCCAACTGCAAACGTATTTTTTTGCGAAGTGTCAAAACTTCAAGAGGAGATGGCTCATGCTGCGTTTAGTGATGATCCTTTCCTTAGTAGTTTGATTATGCCGTTATACGAGAAGTTTGATCAGTATTGGAGAGAAAGTTGTCTAATCCTAGCGATTGCTGTAGCTTTGGATCCGAGGCATAAAATGAAGCTGGTGGAATTCACCTTTGCTAAGATATTTGGTGAGAATGCTGAGTCATGGATAAGAATAGTTGAAGATAGGCTTCGTGAACTATTCATCGAATATAACACACAAATGCTTCCTTTTGCAGCAACAGATGGTGATGAAATTTTTCTAAAGACAGAGCCATATCAAGAAGAATCATGTGATAATTCTATATTTTATGGTGAAGATGTACTTTCTGATTATGAAATTTTGATTTCTGATTTAAAGTCAGAATTGGATGAGTATCTCGAAGCGCCATTACTGCCTATGGTACAGGAATTTGATATTTTGAGTTGGTGGAAATTGAATGGATTCAAGTATCCAACACTGTCTAGAATTGCGTCTGATATTTTATCTATACCGGTATCCACTCTTTTTGGAGATTCAGTATTTGACACAAAAATTAGGAAAATGGATAGCTATAAAAGTTCATTAAGCTCCTCAACTCTTGAAGCCCTTATGTGCACGAAGGATTGGTTCCAATATGAATCCTTACCTATAGATGTTTCAAATGCACTTGTTAAATTGGAATTTTAA 2010 0.3751 MEFDTHVTTVTNNDKPESGAFPNKRQRKKSMVWEYFTVQSVGAGITRAYCKQCKKSFAYISGSKLSGTSHLKRHITLGICQVLRQKNEQSLYCNTDASRDSANRPKKRTRAASGYAGNGSLFDQERCNHDIAKMIILHDYPLHMVEQQGFINFVRTLQPQFNPLCLNSVEANCVSIFHRKKLNMLNLIKGILAQVNLSLDLWTSNQATRYVFVRGHFIDGDWNMHHPILKVITVPFSDCDDSLKQGVVTCLSDWHLDGRLFTVAFDKSFSSETMIGNLRGLLSFKSPLILNGQLLNQNCYARVLSRLAVDTLCSLRETIGKVRESVKFVNSSDSHKNKFFELKQQLQVPSMVDLLIDDESKWNTTYHMLAAACELKEVFTCFDAFDPDYKTIITMSDWKKVQTLCTYLKILYDAANILTGKLYPTANVFFCEVSKLQEEMAHAAFSDDPFLSSLIMPLYEKFDQYWRESCLILAIAVALDPRHKMKLVEFTFAKIFGENAESWIRIVEDRLRELFIEYNTQMLPFAATDGDEIFLKTEPYQEESCDNSIFYGEDVLSDYEILISDLKSELDEYLEAPLLPMVQEFDILSWWKLNGFKYPTLSRIASDILSIPVSTLFGDSVFDTKIRKMDSYKSSLSSSTLEALMCTKDWFQYESLPIDVSNALVKLEF* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0535 669 Pfam hAT family C-terminal dimerisation region 569 651 IPR008906 GO:0046983
Lan5g0535 669 MobiDBLite consensus disorder prediction 1 19 - -
Lan5g0535 669 Coils Coil 556 576 - -
Lan5g0535 669 MobiDBLite consensus disorder prediction 1 25 - -
Lan5g0535 669 SMART bed5 27 83 - -
Lan5g0535 669 Pfam Domain of unknown function (DUF4413) 420 518 IPR025525 GO:0003677
Lan5g0535 669 SUPERFAMILY beta-beta-alpha zinc fingers 30 83 IPR036236 -
Lan5g0535 669 PANTHER BED FINGER-RELATED 18 657 IPR045259 -
Lan5g0535 669 SUPERFAMILY Ribonuclease H-like 195 652 IPR012337 -
Lan5g0535 669 ProSiteProfiles Zinc finger BED-type profile. 27 87 IPR003656 GO:0003677
Lan5g0535 669 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 18 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0535 Lan-Chr5 10822145 10825406 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0535 - - gmx:106799409 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2057 6 31245125 31248561 Lan5g0535 5 10822145 10825406 PCT
Lan3g0134 3 920838 924028 Lan5g0535 5 10822145 10825406 PCT
Lan5g0535 5 10822145 10825406 Lan6g2057 6 31245125 31248561 PCT
Lan5g0535 5 10822145 10825406 Lan3g0134 3 920838 924028 PCT