Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0506 ATGCCGCTTTTACCTAAAAGCGATTCGATACATATTCGTGAGGTGTGGAACGATAACCTTGAAGTTGAATTCGCATTGATAAGGGAAATCGTTGATGATTACCCTTTCATTGCAATGGACACTGAATTTCCAGGGATTGTTCTTCGACCCATTGGGAATTTCAAGAATAGCTATGATTATCATTACCAAACCCTAAAGGATAATGTTGACATGCTCAAGTTGATTCAATTGGGTCTAACATTTTCAGATGAGGAAGGGAATCTTCCCTTTTGTGGGACCAATAGTCACTGCATTTGGCAATTCAATTTCTGTGAATTCGATGTGGATGAGGATGTTTTCGCAAACGATTCGATCGAGCTTCTGAGACAGAGTGGCATTGATTTCAGGAAGAACAATGAGATGGGTATCGATGCGAAACGTTTCGGCGAGATTTTGATGTCATCTGGGATTGTGTTGAATGATAATGTTCATTGGGTTACATTCCATAGTGGTTATGATTTCGGGTATTTGTTGAAGCTTTTAACTTGCAAAAAATTGCCTAATACACAAGTTGGGTTCTTTAACCTCATCAGCATGTATTTCCCAACAGTTTATGACATCAAGCATCTCATGAAGTTTTGCAATAGTCTCCATGGAGGGTTGAACAAGCTTGCAGAGTTATTGGAGGTGGAGAGGGTTGGGATTTCTCATCAAGCCGGTTCGGATAGTTTGCTCACATCTTGTACATTCAGGAAGTTGAAAGAGAATTTCTTCAGTGGATCTTTGGAGAAGTATGCTGGTGTTTTGTATGGTTTAGGTGTTGAGAATGGACATAGTTCTTCTCATTGA 828 0.3973 MPLLPKSDSIHIREVWNDNLEVEFALIREIVDDYPFIAMDTEFPGIVLRPIGNFKNSYDYHYQTLKDNVDMLKLIQLGLTFSDEEGNLPFCGTNSHCIWQFNFCEFDVDEDVFANDSIELLRQSGIDFRKNNEMGIDAKRFGEILMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCKKLPNTQVGFFNLISMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGVLYGLGVENGHSSSH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0506 275 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Lan5g0506 275 Gene3D - 2 269 IPR036397 GO:0003676
Lan5g0506 275 SUPERFAMILY Ribonuclease H-like 5 267 IPR012337 -
Lan5g0506 275 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 272 IPR039637 GO:0004535|GO:0030014
Lan5g0506 275 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0506 Lan-Chr5 10500403 10501541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0506 K12581 - zju:107409059 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0506 5 10500403 10501541 Lan9g0599 9 8702716 8704087 LSH
Lan5g0506 5 10500403 10501541 Lan2g0606 2 9938584 9940588 LSH