Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0361 ATGATATGGTACTATAATATTTCAACCATGGAATCTGTGAGGAGCATGTTTTGTTCATCTCCACCGTTTTCTCAGAGAACTCACCATGGGAACACTCTTCTACCATCTTCACCTTCTACTTCAGTTTTGATGATTTGCGAACAAGCTGCCCCTGCAGTTGCTGCTCGGTCTCGTGGTTGTTCAGTACAGCATTTTCCCACTTCGGTGCTTTTACAAGAGCAGCGTGATGAATATAGGCCTGCACTGCACATGTATAAGGAAGACAAGATATCCCAGGAAATATTAAATATGAGGCAGATGGAAATGGCCTCGATTCATGAAGAGAATAATGCCGGCAATGTTGATCAGTTAGTGCAGGACTTTAGGCGGCAATTGCATCTCTGGCCTAGTTTACAGAACTTGTTGACTTCCTCACAAGTAGGAGAAATTGCTGCTGCTTCTTCAACTCTAGAGAATGTTACTGTTGAATCAGAGACGCCTGCAGATGGTGTGCAATGTAATACAGTTCCTCTTGCTAAAAAATCTTCGTTAGTCTCAAAACAAGCAGCCTCGGTAGCTGAAGACTTGAAATCAATTAAAGCTGATGATGATTCACATCCTTTTGGTCTGGCCTCCACTAGTTTGGTTGACTCTTCAGTTGGAAGCAAGAGAACTGTGAGGTCAGCACGGCTTCTAGAGAGAAGATATAAACAAAGGAAAGCACCAAAGTCTAAAGTTAAAGATGAAGAAAGTTATATTGCAAGGAAAAAAGATGTACTTGTAAAAGAAGAAAAGAAGATACATGAAGGGTTTGAAAAGGATGACCCCCTGCGCTTGTTCCTTTGGGGTCCTGAAACGAAGAAACTTTTGACATTTGAAGAAGAATCTCAATTGGTTGTACAGATACAGGAATTAATGAGATTGGAAGAAGTGAAGACCAGGCTTCAATCTCAATTTGGACAGGAACCAACTATAGCGAAATGGGCTGAGGGGGTGGGACTTAGCACTCGAGTGCTGCAGACAAAGCTTCATTTTGGTAACAGAAGCAGAGAAAAGCTGATTCAAGCCAATTTGCGCTTGGTAGTGCACATTGCTAAAAGTTATCAGGGGCGTGGTCTGAGCCTTATGGACCTAGTACAGGAGGGAAGTATGGGCCTTATTAAGAGTGTAGAAAAGTTCAAGCCCAAAGCCGGTGGCAGATTTGGTTCTTATTCATACTTGTGGATAAGGCAAGCAATACGGAAAGCCATATTTCGACATTCCAGGACAATTCGTCTCCCGGAGAAAGTATATCGCCTTTTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAAGAAGGAAATCTTAACCCGACTAAAGAAGAATTAGCTAGAAGAGTAGGAATTTCAGAAGAAAAGATTGGTGAATTGCTATTTGTTGCAAGATATCCAATTTCTATGCAGCAAACTGTGTGGGCAGACCAAGAAACAACTTTCCAGGAGATTACTGCAGATGCATCAATCGAGGCCCCAGATACGAGTGTTGAAAAACAGCTTATGAGGCGTCATGTGCTCAATGCCCTACGTATCCTACGCCCTAATGAAAGGAAGATAATCCGTCTAAGATTTGGTATGAAAGATGGTGAACCAAAAACTTTATCAGAAGTGGCTGAGATATTTGATTTGTCTAAGGAAAGAGTGCGTCAATTGGAAACCCGAGCGTTATACAAGCTCAAGAAGTCCCTTGTCCATCAAGGACTTGATGCCTATACAGACTTGCTTGTATAG 1749 0.4208 MIWYYNISTMESVRSMFCSSPPFSQRTHHGNTLLPSSPSTSVLMICEQAAPAVAARSRGCSVQHFPTSVLLQEQRDEYRPALHMYKEDKISQEILNMRQMEMASIHEENNAGNVDQLVQDFRRQLHLWPSLQNLLTSSQVGEIAAASSTLENVTVESETPADGVQCNTVPLAKKSSLVSKQAASVAEDLKSIKADDDSHPFGLASTSLVDSSVGSKRTVRSARLLERRYKQRKAPKSKVKDEESYIARKKDVLVKEEKKIHEGFEKDDPLRLFLWGPETKKLLTFEEESQLVVQIQELMRLEEVKTRLQSQFGQEPTIAKWAEGVGLSTRVLQTKLHFGNRSREKLIQANLRLVVHIAKSYQGRGLSLMDLVQEGSMGLIKSVEKFKPKAGGRFGSYSYLWIRQAIRKAIFRHSRTIRLPEKVYRLLGKVMEAKKLYIQEGNLNPTKEELARRVGISEEKIGELLFVARYPISMQQTVWADQETTFQEITADASIEAPDTSVEKQLMRRHVLNALRILRPNERKIIRLRFGMKDGEPKTLSEVAEIFDLSKERVRQLETRALYKLKKSLVHQGLDAYTDLLV* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0361 582 PRINTS Major sigma-70 factor signature 370 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 PRINTS Major sigma-70 factor signature 394 402 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 PRINTS Major sigma-70 factor signature 518 530 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 PRINTS Major sigma-70 factor signature 539 554 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 PRINTS Major sigma-70 factor signature 554 565 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 492 IPR013324 -
Lan5g0361 582 Gene3D - 497 571 IPR036388 -
Lan5g0361 582 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 266 416 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 ProSitePatterns Sigma-70 factors family signature 1. 370 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 Pfam Sigma-70 region 3 426 500 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 CDD Sigma70_r4 508 566 - -
Lan5g0361 582 Pfam Sigma-70, region 4 514 567 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 ProSitePatterns Sigma-70 factors family signature 2. 539 565 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 Gene3D - 419 496 IPR036388 -
Lan5g0361 582 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 479 577 IPR013324 -
Lan5g0361 582 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 13 582 - -
Lan5g0361 582 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 342 569 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lan5g0361 582 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 13 582 - -
Lan5g0361 582 Gene3D - 71 415 - -
Lan5g0361 582 Pfam Sigma-70 region 2 346 415 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0361 Lan-Chr5 7226158 7231337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0361 - - gmx:100778636 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0361 5 7226158 7231337 Lan19g0234 19 2424659 2430213 LSH
Lan11g1428 11 23232581 23237042 Lan5g0361 5 7226158 7231337 PCT