Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0234 ATGGAATCTGCAAATTCTATGTTTCGTTCATCTCCACTCTTTCCTCTTTCTTCTCCTTCTTCAACAACACTTCCTTCATCTTCTTCCCCTTCAGTTTCAATGCTTCATGAACAAGCTACTCTCGCAGTCACATCTAGGTCTTCTAGTTTTGCAGCCAGGAATTTTCCCACCTCGGTTCTTTTACAAGAGCAGCACGATGAGTATAGGCCCCTACTGCATATGTATAAGGAAGACAAGACATCCCAGGCCACATTAAATACAAGGCAGGTGGATATGGCTTCAGTTCATGAAAAGGATAACATTGGCGATACAGATCCATTTGTGCATGACTTTATGCAGCAGTTGCATCTCCGTTCTCATTTACAGAACATATTGACTTCCTCACCGAGACAGGAAATCACTGCTTCTTCTACTCCACAGCCTGTCACTATTGATTCAGACGGGCCTGCACATGGTCTTAAGTCTGATGCAGTTTCTCTTGCCAAGCAAGCTTTGTCAGCCTCAAAACAAGCAGCTTTGGTAGCTAAAGAGTTGAAATCAGTTATAGCTCATGATGCTAATTCACTTCCTTTTAGTATGGCCTCCACAAGCTTGGCCAACTGTTCACTTGGAAAGAATAAAGTTGTGAGGTCAACACGGCTTCTGGAAAGACAATCCAAACAAAGGAAGGTACCAAAGTCAAAAGTTCTCGACGAAGAAAGTTACCTTGCAAGAAAGTCAGATGCACAGGGAAGGTTACGTGTAGAAAAGACGACAAAGGAGGGGTTTAATCAAAACGATCCCCTGCGCTTGTTCTTGTGGGGTCCTGAAACAAAGCAACTTTTGACTGTTGAGGAAGAGTCACAATTGATTTCTCAGCTACAGGATTTATTAAGATTGGAAGAAGTAAAGATGAAACTTCAATCTCATCTCGAGAGGCAACCAACTTTGGCTGAATGGGCTGAGGGTGTCGGCCTTAGCTGTCCAGCATTGCAGACACGGCTTGATTGTGGTAACAGAAGTAGAGAAAAGTTGATTACGGCCAACTTACGCATGGTAGTTCATATTGCTAAAAATTATCTGGGGCGTGGTCTCAGCCTTCAAGACTTATTGCAGGAAGGAAGTATGGGTCTTATGAAGAGTGTGGAGAGGTTTAAACCCCAAGCCGGTTGCCGGTTTGGTACTTATGCATACTGGTGGGTAAGACAAACAATAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGTCTGCCGGAGAATTTATATACCCTTTTGGGCAAGGTCATTGAAGCAAAGAAATTGTGCATTCATGAAGGCAATCTTCGTCCAACCAAAAAAGAATTAGCAGAAAGGGTAGGAATTACAGTAAACAAGTTGGAAAATTTGCTCTTTTCTGCAAGAATTCCACTTTCAATGCAGCAAACTGTGTGGGCAGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCTGCATTCGAGATCCCAGATGTTAGTGTTTCAAAACTGCTTATGAGGAGGCATGTAAGCAACATCTTAAGCATCTTAAGCCCAAAAGAAAGGAGGATAATAAGGCTAAGATTCGGCATTGAGGATGGTCATGAGAAATCATTGTCCGATATTGGAAAGGTATTTGGTTTGACTAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGAACAAGCTCAAGCAGTGCCTTGTCACTGAGGGACTTGATGCATATGTAGACTTGATTGTATAG 1725 0.4296 MESANSMFRSSPLFPLSSPSSTTLPSSSSPSVSMLHEQATLAVTSRSSSFAARNFPTSVLLQEQHDEYRPLLHMYKEDKTSQATLNTRQVDMASVHEKDNIGDTDPFVHDFMQQLHLRSHLQNILTSSPRQEITASSTPQPVTIDSDGPAHGLKSDAVSLAKQALSASKQAALVAKELKSVIAHDANSLPFSMASTSLANCSLGKNKVVRSTRLLERQSKQRKVPKSKVLDEESYLARKSDAQGRLRVEKTTKEGFNQNDPLRLFLWGPETKQLLTVEEESQLISQLQDLLRLEEVKMKLQSHLERQPTLAEWAEGVGLSCPALQTRLDCGNRSREKLITANLRMVVHIAKNYLGRGLSLQDLLQEGSMGLMKSVERFKPQAGCRFGTYAYWWVRQTIRKAIFLHSRTIRLPENLYTLLGKVIEAKKLCIHEGNLRPTKKELAERVGITVNKLENLLFSARIPLSMQQTVWADQDTTFQEITADSAFEIPDVSVSKLLMRRHVSNILSILSPKERRIIRLRFGIEDGHEKSLSDIGKVFGLTKERVRQLESRALNKLKQCLVTEGLDAYVDLIV* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0234 574 ProSitePatterns Sigma-70 factors family signature 2. 531 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 CDD Sigma70_r4 500 558 - -
Lan19g0234 574 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 258 408 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 411 484 IPR013324 -
Lan19g0234 574 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 574 - -
Lan19g0234 574 MobiDBLite consensus disorder prediction 129 144 - -
Lan19g0234 574 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 334 561 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 574 - -
Lan19g0234 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 471 570 IPR013324 -
Lan19g0234 574 Gene3D - 493 573 IPR036388 -
Lan19g0234 574 MobiDBLite consensus disorder prediction 1 31 - -
Lan19g0234 574 PIRSF Sigma_factor_SigC 1 574 IPR016262 -
Lan19g0234 574 Gene3D - 411 487 IPR036388 -
Lan19g0234 574 ProSitePatterns Sigma-70 factors family signature 1. 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 PRINTS Major sigma-70 factor signature 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 PRINTS Major sigma-70 factor signature 386 394 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 PRINTS Major sigma-70 factor signature 510 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 PRINTS Major sigma-70 factor signature 531 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 PRINTS Major sigma-70 factor signature 546 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 Pfam Sigma-70, region 4 507 559 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 Gene3D - 203 407 - -
Lan19g0234 574 Pfam Sigma-70 region 2 338 402 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 Pfam Sigma-70 region 3 419 487 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lan19g0234 574 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0234 Lan-Chr19 2424659 2430213 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0234 - - gmx:100815699 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0361 5 7226158 7231337 Lan19g0234 19 2424659 2430213 LSH
Lan11g1428 11 23232581 23237042 Lan19g0234 19 2424659 2430213 PCT