Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0274 ATGGCGGAACATTTAGCATCGATATTCGGTACCGAAAAGGACAGAGTGAACTGTCCCTTCTACTTCAAGATCGGGGCTTGCAGACATGGCGACCGTTGCTCCAGACTCCACACCAAACCCACCATTAGCCCAACACTTCTTCTCTCCAACATGTACCAGAGACCAGACATGAGTGCACCTGTTGTTGATCCGAATCAGGCTCAGTCTCTTGACCCAGACAAGGTTCAAGATCACTTCGAGAATTTCTATGAGGATTTGTTTGAGGAGCTGAGCAAGTATGGTGAAATTCAGAGTTTGAATATTTGTGATAATTTGGCTGATCATGTGGTTGGCAATGTATATGTTCAGTTTAAAGAGGAAGATCATGCTGCAAATGCATTAATGAATCTAACTGGAAGGTTTTATTCAGGTCAACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTCTGTAATCGAGGAGGCTACTGCAACTTTATGCACCTAAAGAAGATCAGCAGGGATTTGAGAAAGCGGTTATTTGGAAGAAACAGGCGCTTTCATGGCCGCAGTGGAAGCAGAAGTCAAAGCCCTCCAAGGAATCGTAATCATGAGGAGCGTTCACATTCTGGTCGTAGTTCTGATAGAAGAGATTATGACAGACATCATGGACACAGTGGTAGGGGCAGGTTGCCTAGAAGCCGTAGTCCTCAACGGAGAGGAAGAAGTAGAAGTCCGGCGGGAAGGGATAGGTCAGTCAGAGAAAGTAGTGAAGAAAGGAGAGCCAAAATAGAGCAGTGGAACAGGGAGAAGGAACTGGCAGATTCTGGCAACAAGAACAATACCGATGGAAATAATCATGAAGAATAG 885 0.4508 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMSAPVVDPNQAQSLDPDKVQDHFENFYEDLFEELSKYGEIQSLNICDNLADHVVGNVYVQFKEEDHAANALMNLTGRFYSGQPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRNRRFHGRSGSRSQSPPRNRNHEERSHSGRSSDRRDYDRHHGHSGRGRLPRSRSPQRRGRSRSPAGRDRSVRESSEERRAKIEQWNREKELADSGNKNNTDGNNHEE* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0274 294 SUPERFAMILY RNA-binding domain, RBD 32 155 IPR035979 GO:0003676
Lan5g0274 294 ProSiteProfiles Zinc finger C3H1-type profile. 149 176 IPR000571 GO:0046872
Lan5g0274 294 CDD RRM_U2AF35B 44 146 - -
Lan5g0274 294 MobiDBLite consensus disorder prediction 188 294 - -
Lan5g0274 294 SMART rrm2_1 68 143 IPR003954 GO:0003676
Lan5g0274 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 140 IPR000504 GO:0003723
Lan5g0274 294 Gene3D - 43 146 IPR012677 -
Lan5g0274 294 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 PRINTS U2 auxiliary factor small subunit signature 76 91 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 PRINTS U2 auxiliary factor small subunit signature 104 126 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 PRINTS U2 auxiliary factor small subunit signature 131 155 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 PRINTS U2 auxiliary factor small subunit signature 166 178 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Lan5g0274 294 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 292 - -
Lan5g0274 294 MobiDBLite consensus disorder prediction 231 247 - -
Lan5g0274 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Lan5g0274 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 174 IPR000571 GO:0046872
Lan5g0274 294 MobiDBLite consensus disorder prediction 248 294 - -
Lan5g0274 294 MobiDBLite consensus disorder prediction 204 230 - -
Lan5g0274 294 SMART c3hfinal6 149 175 IPR000571 GO:0046872
Lan5g0274 294 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lan5g0274 294 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 292 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan5g0274 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0274 Lan-Chr5 3768291 3773186 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0274 K12836 - gmx:100783847 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0274 5 3768291 3773186 Lan19g0406 19 5312029 5315316 LSH