Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0406 ATGGCGGAACATCTCGCATCCATTTTCGGCACTGAGAAAGACAGAGTAAACTGTCCCTTCTACTTCAAGATCGGAGCATGTAGGCATGGAGATCGTTGTTCAAGACTCCACACGAAACCAACCATCAGTCCAACGATCCTTCTTTCAAACATGTACCAGAGACCTGATATGAACATCAATATCAATTTGAATGTTTCTGATCCTGATCAACCTCCTCAATCTGAACCTCCTCAGTCTCAGTCTTCTCTTGATCCTGATAAGGTGCAAGAACATTTTGAGGATTTTTATCAAGATCTGTTTGAGGAGCTTAGTAAGTATGGTCAGATTCAGAGCTTGAATATTTGTGACAATTTGGCTGATCATATGGTTGGCAATGTATATGTTCAGTTTAAAGAGGAGGACCATGCTGCCAATGCTCTTATGAATCTCACGGGAAGGTTTTATTCAGGTCGACCCATCATTGTCGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGTAATCGAGGCGGCTACTGCAACTTTATGCATCTAAAAAAGATAAGCAGGGAATTGAGAAAGCAATTATTTGGAAGAAACAAGCGTTGGAATGACCGTAGTGGAAGCAGAAGTCGGAGCCCTCCGAGGAGTCGTGCCTATGAGGAACATTCACATTCTGGTCGTGGTTCTGGTAGAAGAGATATTGACAGGTATCATGACAGTCGTGATAGGAGGCCTAGAAGCCGTAGTCCTCGACGTAGAGAAAAACGAAGCCGGAGTCCTGTGGACAGGAATGCAAGACGGGCCAGAGAAAGTAGTGCAGAAAGGAGAGCTAAAATAGAGCAATGGAACAGGGAGAAGGAACTTAAAGACTCTGGTAACAAAAACAATACGAATAGCAATGATCACGATGAACAGGGTGCTGCACAAAATGGTAGTGAATCTGGTGACCATTAG 963 0.4351 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTILLSNMYQRPDMNININLNVSDPDQPPQSEPPQSQSSLDPDKVQEHFEDFYQDLFEELSKYGQIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRKQLFGRNKRWNDRSGSRSRSPPRSRAYEEHSHSGRGSGRRDIDRYHDSRDRRPRSRSPRRREKRSRSPVDRNARRARESSAERRAKIEQWNREKELKDSGNKNNTNSNDHDEQGAAQNGSESGDH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0406 320 MobiDBLite consensus disorder prediction 204 320 - -
Lan19g0406 320 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 PRINTS U2 auxiliary factor small subunit signature 89 104 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 PRINTS U2 auxiliary factor small subunit signature 117 139 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 PRINTS U2 auxiliary factor small subunit signature 144 168 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 PRINTS U2 auxiliary factor small subunit signature 179 191 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Lan19g0406 320 SMART rrm2_1 81 156 IPR003954 GO:0003676
Lan19g0406 320 CDD RRM_U2AF35B 44 159 - -
Lan19g0406 320 Gene3D - 43 159 IPR012677 -
Lan19g0406 320 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 313 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lan19g0406 320 SUPERFAMILY RNA-binding domain, RBD 91 163 IPR035979 GO:0003676
Lan19g0406 320 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 313 - -
Lan19g0406 320 MobiDBLite consensus disorder prediction 296 320 - -
Lan19g0406 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 160 IPR000504 GO:0003723
Lan19g0406 320 SMART c3hfinal6 162 188 IPR000571 GO:0046872
Lan19g0406 320 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lan19g0406 320 MobiDBLite consensus disorder prediction 258 295 - -
Lan19g0406 320 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Lan19g0406 320 MobiDBLite consensus disorder prediction 204 247 - -
Lan19g0406 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 153 IPR000504 GO:0003723
Lan19g0406 320 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Lan19g0406 320 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 187 IPR000571 GO:0046872
Lan19g0406 320 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0406 Lan-Chr19 5312029 5315316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0406 K12836 - gmx:100783847 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0274 5 3768291 3773186 Lan19g0406 19 5312029 5315316 LSH