Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0214 ATGAACGTTGATCACAACCAACCTCACACAAATTCACACACTCTACAAACCCTAACAACAGCTCCGATTTCCTCTTCAATTTCAAACCTCTCTTCTTCCGATCGTGATTTCAAATTCTATACCAATTTCAACGAATTCAAGCTCCCTGTTAACGAAATCTCGAAGGAATCACAGTTTATGCTTCAATCAATCGGTGCTTCAATCGCGAAGGATTCAGCATTCCCTGTTGATGTAGACGAGGCTTATGATTGGGTTGTGGATGTAAACGACGACGTTTTGGAGCGATTTGATATCTCTGCTGACGAGTTTCGGAAGGTTAGGATGGATGAGGAGGAAGTGGTAGTGCGTGAAGGGGCGAATTCGGCTATGGAAGATGATGGTTTTACGTTGGTTTGTAGGAATAAGAAGAAAAATGGAGGGAGGAATTATGATTCTTCGGAGAAAGTGGTGATTGATTCGGAGACAAGTGTTAAGGTTACAATGAAGGATAAGAAGACGATTGGGCCGAAATCGAAGGTTCCGTTTCATATACCGACGATTAGGAGGCCTCAGGATGAGTATACCATAATGGTTAATAATTCAAACATGCCTTTTGAGCATGTCTGGTTGGAGAGGAGTGGTGATGGTCAGAGGGTTATTCATCCATTGGAGAAACTCTCAGTTTTGGATTTTGTTGATAAGGAACCCGGGAATGTTGTGCCAGTGAAACCTCCCCCATTAGAGAGCACCCCTTTCAGGCTTGTGGAGGATGTCAAAAGTTTGAAGGAGTTGGCTGCTAAGCTGCGTTCTGCTCATGAATTTGCGGTTGACTTGGAACATAATCAATATCGTTCTTTCCAAGGTTTGACTTGCCTGATGCAAATCTCAACAAGGACTGAAGATTTTGTTGTAGACACTTTGAAACTTCGCGTTCATGTTGGGCCCTACCTAAGGGAAGTGTTCAAAGACCCTGCGAAGAGGAAGGTCATGCATGGTGCAGATCGAGATGTTGTGTGGCTTCAACGAGATTTTGGCATTTACATTTGTAATCTGTTCGACACTGGCCAGGCTTCAAAGGTGTTAAAATTGGAGAGAAATAGTTTGGAGTATCTTCTGCGTCACTTCTGTGAGATTACTGCAAACAAAGAGTACCAGAATGCAGATTGGAGAGTACGACCTCTTCCTGATGAGATGCTAAGATATGCCAGAGAAGATACACATTATCTTATGTATATATATGATTTGATGAGGATTGATTTATTTGCATTGTCTAAGAAGTCTGAAAGTTCTGACGATTCTCTGTTGGAGGTTTATGAGCACAGTTATGATGTCTGCATGCAGCTCTATGAGAAAGAACTTCTGACAGAGAACTCCTACCTTCATATATATGGGTTGCAAGGAGCTGGTTTTAATGCTCAGCAGCTTGCCATTGTTTCTGGTCTCTGTGAATGGCGGGACATTGTCGCGCGTTCAGTGGATGAGAGTACTGGATATATACTGCCAAATAAAGCTGTTCTTGAAATAGCTAAGCAGATGCCCGTGACTACAATCAAACTACTGCGTTTGGTAAAGTCGAAGCACCCCTTTGTTGAACGCAATCTTGATAGTGTCCTTGAGATCATTAAGCATTCTATTCAAAATGCTGCTGCCTTTGAAGAAGCTGCTCAGCAATTGAGTGAAGGAAATGCTTCTACTTCATCAGATGTTGTACCGGTTAAAGATAGAACTGAAGACCCCCAACTCCATACACAAGACTCAAAGGAATCCTCTCAGCATCAAGATATAAATGTCCTAGTAAAAATTAAGTCCCCTAGTTTCACACTCTCAAAAGCAAAGGAAAATAGAGGAAGTATTGAGGTGCTAAAACAGCCTACTGGTGCTTTTGGCGCACTGCTGGGGAGTTCAGCTTCCAAGAGGAAGCTTAATCCTGAAAACAAGGACAACGAAGACGTCAAACTACAGCAGTTTAGATCTTCAGTTAATCTTCCTTTCCATTCATTTTTGGGTGGCACTCAGGTATCAAAACCTGTTGTAAAAAGTCCTAGTTTGGCATCGGAAACATCAAACCCACAAAAACCTGTTCCAGTTCATGTTTCCACCTCCACTTTAGATGAGATTATAATTCTAGAGTCGGATACAGCTGTGGAGGATATGGAGCAGAATAACGTAGAAAACTCTAATGATCACAGAGAGATAAATTCCAATGTGTCCACTTCGGGAAAAGAGGACGAAGTTGAGCCAATGTCTCTTTCCGAATTGTCATCGAGCTTTCAGAAGTGCTTTCAGTCAAACAATCAAAATATCAAAACAAGACTGCTCAAGAAAACTGAACAAGTTGGTGGCTTATTGCAGCTGAAGCCATTTGATTATGAAGAGGCAATGAAACATGTTAAGTTTGGAGAAAACAAAAAACATGCATCATTCCAGAATGATGGTGATGTGGGACGAGACGACTCGGGTAGTAAGAAGAAACATTCAACAACAGGACAAGAACAAACAACTGATTTGACAAAACAATTGCAGCAAGGTAGAAGACGTCAGGCATTTCCAGCATCTGGGAATCGAAGTGCAACGTTCCGCTGA 2562 0.4192 MNVDHNQPHTNSHTLQTLTTAPISSSISNLSSSDRDFKFYTNFNEFKLPVNEISKESQFMLQSIGASIAKDSAFPVDVDEAYDWVVDVNDDVLERFDISADEFRKVRMDEEEVVVREGANSAMEDDGFTLVCRNKKKNGGRNYDSSEKVVIDSETSVKVTMKDKKTIGPKSKVPFHIPTIRRPQDEYTIMVNNSNMPFEHVWLERSGDGQRVIHPLEKLSVLDFVDKEPGNVVPVKPPPLESTPFRLVEDVKSLKELAAKLRSAHEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRVHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASKVLKLERNSLEYLLRHFCEITANKEYQNADWRVRPLPDEMLRYAREDTHYLMYIYDLMRIDLFALSKKSESSDDSLLEVYEHSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQLAIVSGLCEWRDIVARSVDESTGYILPNKAVLEIAKQMPVTTIKLLRLVKSKHPFVERNLDSVLEIIKHSIQNAAAFEEAAQQLSEGNASTSSDVVPVKDRTEDPQLHTQDSKESSQHQDINVLVKIKSPSFTLSKAKENRGSIEVLKQPTGAFGALLGSSASKRKLNPENKDNEDVKLQQFRSSVNLPFHSFLGGTQVSKPVVKSPSLASETSNPQKPVPVHVSTSTLDEIIILESDTAVEDMEQNNVENSNDHREINSNVSTSGKEDEVEPMSLSELSSSFQKCFQSNNQNIKTRLLKKTEQVGGLLQLKPFDYEEAMKHVKFGENKKHASFQNDGDVGRDDSGSKKKHSTTGQEQTTDLTKQLQQGRRRQAFPASGNRSATFR* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0214 853 MobiDBLite consensus disorder prediction 823 853 - -
Lan5g0214 853 ProSiteProfiles HRDC domain profile. 464 544 IPR002121 GO:0003676
Lan5g0214 853 SMART 35exoneu6 245 414 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lan5g0214 853 Pfam HRDC domain 467 534 IPR002121 GO:0003676
Lan5g0214 853 MobiDBLite consensus disorder prediction 794 853 - -
Lan5g0214 853 Gene3D - 179 449 IPR036397 GO:0003676
Lan5g0214 853 PANTHER 3'-5' EXONUCLEASE 23 687 - -
Lan5g0214 853 SUPERFAMILY Ribonuclease H-like 180 442 IPR012337 -
Lan5g0214 853 MobiDBLite consensus disorder prediction 714 736 - -
Lan5g0214 853 Gene3D HRDC domain 450 547 IPR044876 -
Lan5g0214 853 MobiDBLite consensus disorder prediction 549 563 - -
Lan5g0214 853 Pfam PMC2NT (NUC016) domain 31 104 IPR012588 GO:0000176|GO:0006396
Lan5g0214 853 Pfam 3'-5' exonuclease 246 410 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lan5g0214 853 MobiDBLite consensus disorder prediction 564 582 - -
Lan5g0214 853 SMART hrdc7 464 543 IPR002121 GO:0003676
Lan5g0214 853 CDD Rrp6p_like_exo 241 431 - -
Lan5g0214 853 MobiDBLite consensus disorder prediction 794 822 - -
Lan5g0214 853 MobiDBLite consensus disorder prediction 549 587 - -
Lan5g0214 853 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 23 687 IPR045092 GO:0000175|GO:0000467
Lan5g0214 853 SUPERFAMILY HRDC-like 446 539 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0214 Lan-Chr5 2641183 2657420 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0214 K12591 - gmx:100815329 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0762 10 10212469 10224942 Lan5g0214 5 2641183 2657420 LSH