Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0723 ATGGATTATCAGTATATTGTGGCAGGAGGGTTTATAGCTTCTACTTTGGTGCTTCTTTTGGTTCTGCTGTTTGATTCTGCAGCAAAGAAGAAGAAAGCCATAGGTTCATTACATGCAGAAGAAATTAATAATGATTGTGCAAAGACATCTTCAGAAAATGGAACATGCCCTCAAGAAGTGGTAGGAACCACTGACATCATCATTGTTGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTACACACTTGGCAAGGATGGAAGGAGAGTGCATGTTATTGAAAGGGACTTAACTGAGCCAGACAGGACCGTGGGTGAATTACTACAACCTGGTGGCTATCTCAAGTTAACTGAGTTGGGTCTTGAGGATTGTGTGGAGGAAATTGATGCTCAGGAAGTGTATGGCTATGTTCTCTATAAGGATGGAAAAAATGTCAAGGTTTCTAATCCCTTGGATAAATTTGGCTCTCATGTTTCTGGTAGAAGCTTTCACAATGGCCGTTTCATACAGAAAATGAGACACAAGGCTCTATCTCTTCCAAATGTAAAATTAGAACAAGGAACAGTGACATCTCTATTGGAAGAAAAAGGAATAATCAAAGGAGTGCACTATAAAACCAAGTGTGGAGAAGAGCTCATAGCAAAGGCTCCACTCACCATAGTTTGTGATGGTTGTTTTTCCAATTTAAGGCGTTCACTTTGCAACCCTAAGGTTGATGTACCATCATATTTTGTTAGTATGCTTCTTGAGAACTGTAATATTCCACATGCAAACCATGGTCACATTATCTTGGGTGATCCTTCACTCATTTTGTTTTATTCCATTAGTAGTACTGAGATTCGTTGTTTCGTTGATGTGCCTGGTCCTAAATTACCTTCCCTTGCTAATGGTGACATGGCCAATTATTTCAAAACTGTAGTAGCTCCTCAGGTTCCACCAGAGTTGCAGAAATCTTTTATAGAAGCAGTTGAAAAAGGAAAGATGAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCTAATCCAAAACCTGGTGCTCTTCTGTTGGGTGATGCTTTCAATATGCGTCACCCTTTAACAGGTGGAGGAATGACTGTGGCTTTATCTGACATTGTTATCCTAACAAATCTTCTTAGACCTCTCCATAACCTGCATGATGCTTCATCTCTTTGCACATATCTTCAATCATTCTACACCTTGCGCAAGCCAGTGGCATCTACAATAAACACATTAGCTGGTGCAGTATACAAGGCATTTTGTGCATCCCCTGACCCAGGAATGAAAGAAATGAGGCAAGCATGTTTTGATTATTTGAGCCTTGGAGGTGTATTCTCAGATGGAATAATTGCTTTATTCTGTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTTGCCATGGCTATATATGGCGTTGGTCACTTATTCATACCATTTCCTTCTCCAAAACGCATTTGGGTCGGAGCTAGATTGATTTCAGGTGCATCAGGCATCATTTTCCCTATTATCAAAGCTGAAGGAGTTAGACAAATGTTCTTCCCAGCAACAGTTCCAGCATATTATAGAACACCTCCTACCAATTAG 1587 0.4083 MDYQYIVAGGFIASTLVLLLVLLFDSAAKKKKAIGSLHAEEINNDCAKTSSENGTCPQEVVGTTDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLTEPDRTVGELLQPGGYLKLTELGLEDCVEEIDAQEVYGYVLYKDGKNVKVSNPLDKFGSHVSGRSFHNGRFIQKMRHKALSLPNVKLEQGTVTSLLEEKGIIKGVHYKTKCGEELIAKAPLTIVCDGCFSNLRRSLCNPKVDVPSYFVSMLLENCNIPHANHGHIILGDPSLILFYSISSTEIRCFVDVPGPKLPSLANGDMANYFKTVVAPQVPPELQKSFIEAVEKGKMRSMPNRSMPASPNPKPGALLLGDAFNMRHPLTGGGMTVALSDIVILTNLLRPLHNLHDASSLCTYLQSFYTLRKPVASTINTLAGAVYKAFCASPDPGMKEMRQACFDYLSLGGVFSDGIIALFCGLNPRPLSLVLHFFAMAIYGVGHLFIPFPSPKRIWVGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPTN* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0723 528 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 528 - -
Lan4g0723 528 Gene3D - 52 418 IPR036188 -
Lan4g0723 528 PANTHER SQUALENE MONOOXYGENASE 1 528 IPR040125 GO:0004506|GO:0016126
Lan4g0723 528 SUPERFAMILY FAD/NAD(P)-binding domain 64 439 IPR036188 -
Lan4g0723 528 Pfam Squalene epoxidase 214 487 IPR013698 GO:0004506|GO:0016021|GO:0050660
Lan4g0723 528 Pfam NAD(P)-binding Rossmann-like domain 68 94 - -
Lan4g0723 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 65 87 - -
Lan4g0723 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 229 - -
Lan4g0723 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Lan4g0723 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0723 Lan-Chr4 9537548 9542165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0723 65 527 Miscellaneous Gene Families AT1G58440 74.946 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0723 K00511 - gmx:100795027 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0610 18 11164414 11168430 Lan4g0723 4 9537548 9542165 PCT
Lan4g0723 4 9537548 9542165 Lan18g0610 18 11164414 11168430 PCT