Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0643 ATGCTTGTGGCATTGCTCTTGCTGCTAGCATTGAGCAATGCTGTTAGAATTGATGCAGATGGTGGACAATGTGGTTCAAATCCAACACTAAACCCAAGACCACACAGTGTTTCAATTTTGGAATTTGGTGCAGTTGGAGATGGTAAAACACTCAACACTCTTGCATTCCAAAATGCAATCTTCTATCTCAAATCATTTGCTGACAAAGGTGGAGCTCAGCTTTATGTACCACCAGGAAAATGGCTCACTGGTAGTTTCAATCTCACAAGTCACCTTACTCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTATTGAACCATTACCTTCTTATGGCCGAGGCCTTGAAGTTCCTGGTGGAAGATATCAGAGTTTGATAAATGGATATAGGCTACAAGATGTGGTCATAACAGGTAATAATGGAACCATCGATGGAGTCGGATCGATTTGGTGGGAGTTGTTTACCTCTCATTCCTTGAACTATAGCCGCCCTCATCTAGTTGAAATTGTAGCATCTGAATTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTTCTCCTCCAAAATCTCCTTACACTGTTGGAATAGTGCCAGATTCTTCTGATAGTGTTTGTATAGAAGATTGCATTGTAAGCATGGGATATGATGCAATTGCCCTTAAAAGTGGTTGGGATGAATATGGCATTGCTTATGGCAGGCCCACTGAGAATGTACACATCAGAAAGGTGTATCTTGAAGCATTTTCTGGCTCTACTTTAGCATTTGGCAGTGACATGTCTGGGGGTATTTCAAATGTTCTCGTGGAGCATGTTCGTATTTTAGACTCGAATAGCGGCATTGAGTTCAGAACCATCAAAGGAAGAGGTGGTTATATGAAAGATATTGTCTTGTCAGACATACAAATGGAGAATGTCTATACCGCAATCGCCGCTACAGGTCATTGTGGATCTCATCCTGATGACAAATTTGATCCAAATGCGCTACCGATTTTGGATCACATAACCTTGAAGGATGTTACTGGTACAAACATCACAATTGCTGGAAGCTTTGTTGGAATAAAAGAATCTCCTTTTACTAACATTTGCCTTTCCAATATAACATTGTCTACCAATTCTGCTTCTACTATTACTTGGGAATGCTCAAATGTCTCTGGCTTTTCCGACTCCGTGTCTCCGAAACCATGTCGAGACCTTGACAGCCCTTCAAATTCTTCTTCATCATGTTTCTCCTACTTGCTGAGTATCACTGAAGGACAAACTGCAGTACTGTGA 1362 0.4082 MLVALLLLLALSNAVRIDADGGQCGSNPTLNPRPHSVSILEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVIEPLPSYGRGLEVPGGRYQSLINGYRLQDVVITGNNGTIDGVGSIWWELFTSHSLNYSRPHLVEIVASEFVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISSPPKSPYTVGIVPDSSDSVCIEDCIVSMGYDAIALKSGWDEYGIAYGRPTENVHIRKVYLEAFSGSTLAFGSDMSGGISNVLVEHVRILDSNSGIEFRTIKGRGGYMKDIVLSDIQMENVYTAIAATGHCGSHPDDKFDPNALPILDHITLKDVTGTNITIAGSFVGIKESPFTNICLSNITLSTNSASTITWECSNVSGFSDSVSPKPCRDLDSPSNSSSSCFSYLLSITEGQTAVL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0643 453 PANTHER PECTIN LYASE-RELATED 2 443 - -
Lan4g0643 453 Gene3D - 26 420 IPR012334 -
Lan4g0643 453 SUPERFAMILY Pectin lyase-like 32 427 IPR011050 -
Lan4g0643 453 Pfam Glycosyl hydrolases family 28 133 414 IPR000743 GO:0004650|GO:0005975
Lan4g0643 453 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0643 Lan-Chr4 8742892 8745945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0643 1 440 Glycoside Hydrolase AT3G16850 62.896 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0643 - - gmx:100806574 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0643 4 8742892 8745945 Lan16g0184 16 1464010 1467000 LSH
Lan4g0643 4 8742892 8745945 Lan19g0873 19 16208784 16211625 LSH