Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0184 ATGCTTGTGGCATTGCTCTTGCTGCTGGTATTGAGCAATGCTGTTAGAATTGATGCAGAAGGTGGACAATGTGTTTCAAATCCAACATTAGACCCAAGACCACACAGTGTCTCAATTTCGGAGTTCGGCGCAGTTGGAGATGGCAAAACACTCAACACTCTTGCATTCCAAAATGCCATCTTTTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTATATGTACCACCAGGAAAATGGCTCACTGGTAGTTTCAATCTTACAAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCGTCTCATTGGGATGTTGTTGCACCATTACCTTCTTATGGCCGAGGTCTTGAAGTTCCTGGTGGAAGATATCAGAGTTTGATAAGTGGATACATGTTACATGATGTGGTCATAACAGGTAATAATGGAACCATCGATGGAACCGGATCGGTTTGGTGGGACTTGTTTGACTCACATTCCTTGAACTATAGCCGTCCTCATCTAGTTGAAATTGTAGCATCTGAATTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCGATTTCTGCTCCTCCAGAATCCCCTTATACGGTTGGTATAGTACCAGATTCTTCAGATAGTGTTTGTATAGAAGATTGTGTTGTAACCATGGGATATGATGCAATTGCCTTAAAAAGTGGCTGGGATGAATATGGTATTGCTTATGGCAGGCCCACCGAAAATGTACACATTAGAAAGGTGTATCTTAAAGCATTTTCCGGCTCTAGTTTAGCATTTGGCAGTGAAATGTCGGGTGGTATTTCAAATGTTCTTGTGGAGGATGTTCATATTTTCAACTCGAATAGCGGCATTGAGTTCAGAACCATCAAAGGAAGAGGTGGTTATATGAAAGATATTTTTATGTCGGACATACAAATGGAGAATGTCGATACAGCAATTTCTGCCACAGGCCGTTTCGGCTCTCACCCTGATGACAAATTTGATCCAAAGGCACTACCACTTTTAGATCACATTACCTTGAAGGATGTTACTGGTACAAACATCACAATTGCTGGAAGTTTTGCTGGAATAGAAGAATCTCCTTTTTCAAATATATGCCTTTCAAACATAACCTTGTCTACCAATTCAGTTTCTACTATTACTTGGGAATGTTCAAACGTCTCCGGCTTTTCGGATTCTGTGTCTCCGAAACCCTGTCCAGACCTTGAGAACCCTTCAAATTCTTCTTCATCATGTTTTCCCTACTTGCTGAGTATCACTGAAAGAAAAACTGCAGTGCTGTGA 1362 0.4119 MLVALLLLLVLSNAVRIDAEGGQCVSNPTLDPRPHSVSISEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVVAPLPSYGRGLEVPGGRYQSLISGYMLHDVVITGNNGTIDGTGSVWWDLFDSHSLNYSRPHLVEIVASEFVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISAPPESPYTVGIVPDSSDSVCIEDCVVTMGYDAIALKSGWDEYGIAYGRPTENVHIRKVYLKAFSGSSLAFGSEMSGGISNVLVEDVHIFNSNSGIEFRTIKGRGGYMKDIFMSDIQMENVDTAISATGRFGSHPDDKFDPKALPLLDHITLKDVTGTNITIAGSFAGIEESPFSNICLSNITLSTNSVSTITWECSNVSGFSDSVSPKPCPDLENPSNSSSSCFPYLLSITERKTAVL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0184 453 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 442 - -
Lan16g0184 453 SUPERFAMILY Pectin lyase-like 31 427 IPR011050 -
Lan16g0184 453 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Lan16g0184 453 PANTHER PECTIN LYASE-RELATED 2 442 - -
Lan16g0184 453 Gene3D - 17 420 IPR012334 -
Lan16g0184 453 Pfam Glycosyl hydrolases family 28 133 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0184 Lan-Chr16 1464010 1467000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0184 3 434 Glycoside Hydrolase AT3G06770 64.384 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0184 - - gmx:100777503 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0643 4 8742892 8745945 Lan16g0184 16 1464010 1467000 LSH
Lan16g0184 16 1464010 1467000 Lan19g0873 19 16208784 16211625 LSH