Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0592 ATGGAAGAAATGACAATGCCAATAGATAACTGTAGCCATGCTCTTCCATTTGCAAGAAGCTATCAGGTTGAAGCATTTGAGAAAGCTATGAAGGAAAACACCATAGTGTTCTTAGAGACTGGTGCAGGCAAGACTTTGATAGCTATCATGCTTCTCCGAAGCTACGCTTATCTTCTGCGAAAGCCTTCGCCTTACATTGCGGTTTTCTTGGTTCCCAAAGTTGTGTTGGTATCTCAACAAGCTGAAGCGGTGAAAGCGCTCACTGATTTAAAAGTGGGAATGTATTGGGGAGAAATGGGAGTTGATTACTGGGATGCTTCCACCTGGAACAAAGAATTTGAGAAACATGAGGTTCTGGTTATGACCCCCGCGATATTGCTTATGAGCTTGAGACATAGCTTTCTCAAACTTAACATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGTAGAGACCCTTACGCCTGCATCATGAGAGAGTTTTATCATGACCAATTAAAATCTGGTGTCTCTGATCTACCTCGGATATTCGGGATGACTGCATCTCCAATTAAGTCAAATGTTGGGAATTCTGAATGGACCTTGGCAGAAAGTATTCGTAAACTAATGACTCTAATGCATTCAAAGGTATATACTTGTGCAAGTGAAGCTATAACAGAGTTCGTTCCAATATCAACCCCAAAATTCAAGTTTTACAGGGAAGATGAAATTTCATATGTGCTATTTGAAGACTTGTCTGTTAAGATCAAGATGTTGAAACAGCAGCATGAACTCGCCCTCAGAAATTCAGATTTCACAGAATCAGCTGCAGAGTCTGCACACAAACGAATCGAAAAGAGTTTTTGTGCTATAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTTTGAAGGCTGCAGAGTCCTTATTTTCCAATGAAACTGAATCATTTTTACGTGACAACTCTGGGGATGGACTTGTTAAAAGTTTCAATCTTGCTACTGTGAATTATCTTACAACTTACTTACCGTCTGGTCCTCAGTGGTCTATTGGTGATAATATTAAATCTGCCGTGGATATGGGGCTGTTAACCTCCAAAGTTTTCTGTCTTGTCGACTCTCTGCTTGAGTACAGGGATTTGAATAATATGAGATGTATAGTTTTTGTTGAAAGGGTCATAACAGCAGTTGTTCTTGAGACTCTTTTGAATGTCTTGCTTCCAAAATACAATAGCTGGAAGACAAAATTCATAGCAGGACACAATTCTGGATTGAAAAATCAAACTAGGAATAAGCAAAATGAAATTGTCGAAGAATTTCGTGATGGATCGGTCAACATTATTGTTGCAACTTCGATTCTTGAAGAGGGTTTAGATGTCCAAAGTTGCAATTTGGTTATTAGATTTGATCCATGTCCCACAGTATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACGTATTAATGGTTAAGAGTGGGGATTCAGTTACACATTCAAGACTAGAGAAATACCTTGCAAGTGGGGATATCATGAGGAAGGAGTCCCTACGTCAATCTTCAATTCCTTGTGGTTCACTTGAACTACTTCCGGAGGAAGTTTATCGTGTTGAAAGCACTGGAGCCATTGTTAATCTCAGTTCTAGCATTACTTTGATATACTTGTATTGCTCATGGCTCCCTTCAGATGGGTACTTTAAACCATCTCCAAGATGGGACAAAGAGACTGGAACACTGTATCTTCCCAAGAGTTGCCCTCTACAGCCTATTCAGGTACAAGGTGACAAAAAATTCTTAAAGAACATTGCATGTCTTGAAGCATGCAAGCAACTTCATAATATTGGAGCTTTGACCGATAATCTTGTTCCTGATATTGTCGTGGAAGAAGCAGAGGTGGATGAATTTGAGAATGAGCCTTACAATGAGGAGCAACCAAGTTATGTACCGCCTCAATTGATCAACCACTTCTCGAAAGATGATAAGACAATATATCACTGTTATTTAATTGAATTGAAGCAAAATTTTAGCTACGACATCTCTGTGCGTGACATTGTGCTTGCAACAAGAAGTGAGCTTGATCCAGAAATTGGAAGCACACAATTTGAAATGTGCTTTGACCGGGGTAGTCTGTCGATAAACTTAAGACGCATCGGAGCTGTTCATCTTTCCCCAAACGAGGTTCTTTTGTGTAAAACATTCCAAGTCACTATTCTCAAGATTCTTGTAGATCATAATATTGATAAGTTGGCAGCTAGTGTAAAATCTTTAGATAAACTCTATTTGGATGATGATCTGGAGATTGATTATCTTCTGCTACCAGCCACTGCCATACAACATAGACCTGCCGTAATTGATTGGGTGTCCATTACCTCTGTCAATCCCTCTAAAATTACATGCAAGAAGCATTCTCCAAAAGTATGGACGAAAAACGGTCTAGTTTGCCCTTGCATACTACAAGACTCTTTGGTTTATACTCCTCATAATGGTCGTATTTATATCACCACTAATATAATGGAATTGGATGGGAACTCACCTCTGGAACTAAGGGATGGCGGAATTACTACGTACAAGAAATACTATGAAGAAAAGCATGCCACTCAATTGTGTTTTGAACATCAACAACTGCTTAATGCAAGACACATTTTTCTCGTTAAAAATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGAAGCAGGCAAGAACTTTGTTGAACTGCCTCCTGAATTGTGCTGTATAATCATGTCACCGATATCAATTAGTACACTTTATTCCTTCTCATTTGTTCCATCAATCATGCATCGACTTCAGTCATTGCTTGGAGCTTCAAATCTAAAGAAGATGTATTTGGACCATTGCATGCAACATGAGATTCAAACAGTCAAGGTCTTGGAAGCAATTACTACTAAAAGATGCAAAGAACCCTTTCATTATGAATCTCTAGAGACTCTTGGAGATTCTTTTCTAAAATATGCTGCCAGTAAGGAGCTGTTTAAGTCGTACCAAAATCTTCACGAAGGTCTCCTTAGTGTGAAGAGGACAAAGATAATTTCTAATGCTGCCCTCTCTAAGTTCGGGTGCAATTGTGGACTTCCGGGCTTCATACGAAATGCACCTTTTGAACCCCATACCTGGCTTATTCCTGGTGATAAATCTGAAAGCTTTAAATTAAAAGAAGAGTTGAATTCCAACGGGTCAAAAATCTATGTTAGTGGAAAACAAAAATTGAAACGAAAGATTATTGCTGACGTTGTAGAGGCACTAATTGGTGCCTTCCTTACCAGTGGTGGTGAAAAGGCTGCATTGTTGTTTATGGATTGGATAGGCATTAAAGTGAATTTTAACATTGTACCCTATGAGAGGCACTTAAGCATTCAACCGGAGAAGCTGGTAAACGTCAACTTTCTAGAATCTTTATTGAAATACTCGTTTCACGACCGTTCTCTGTTGGTAGAAGCTCTGACCCATGGTTCTTACATGCTGCCTGAAATTCCTAGTTGTTATCAGCGACTAGAATTTCTTGGAGACTCGATATTGGATTATCTCATTACCATGCATTTATATGAGAAATATCCAGGCTTGTCACCGGGGCAATTAACTGACATGAGATCAGCTTCAGTAAACAATGATTGTTATGCATGGTCTGCCATTAAAGCTGGGTTGCACAAACACATACTGCATGCATCACAGGAACTACAGAAGCACATCTTCAACACACTTAATATCTTCCGAAAGTTGGCTTCATCAACAACTTTTGGATGGGAGTGCGAGACATCGTTTCCCAAGGTACTTGGAGACATTATAGAATCTCTAGCTGGAGCAATTCTTGTTGATTCGGGATACAATAAGGAGGTTGTATGGCAAAGCATAAGTCCACTTTTGGAACCCCTTATCACTCCTGAAACATTAAAGCTACACCCGGTTCGAGAGTTGACCGAACTATGCCAAAGAGAAGGTTACACTCAGAACATTACCATTTCTAGCAAGGATGGTGTTATTTGTGCTAGAGTTGAGGTGGATGCAAATGGGGTCATTCACCAATATGAATATAGTGGTTGTGTTGACAAGAAAACAGCCAAGAAGTTAGGCTGCAAGGAAATATTGAAGTCCTTGCAGAAAACAGAAGGCAAATGA 4137 0.3967 MEEMTMPIDNCSHALPFARSYQVEAFEKAMKENTIVFLETGAGKTLIAIMLLRSYAYLLRKPSPYIAVFLVPKVVLVSQQAEAVKALTDLKVGMYWGEMGVDYWDASTWNKEFEKHEVLVMTPAILLMSLRHSFLKLNMIKVLIMDECHHARGRDPYACIMREFYHDQLKSGVSDLPRIFGMTASPIKSNVGNSEWTLAESIRKLMTLMHSKVYTCASEAITEFVPISTPKFKFYREDEISYVLFEDLSVKIKMLKQQHELALRNSDFTESAAESAHKRIEKSFCAIMFCLDELGVWLALKAAESLFSNETESFLRDNSGDGLVKSFNLATVNYLTTYLPSGPQWSIGDNIKSAVDMGLLTSKVFCLVDSLLEYRDLNNMRCIVFVERVITAVVLETLLNVLLPKYNSWKTKFIAGHNSGLKNQTRNKQNEIVEEFRDGSVNIIVATSILEEGLDVQSCNLVIRFDPCPTVCSFIQSRGRARMQNSDYVLMVKSGDSVTHSRLEKYLASGDIMRKESLRQSSIPCGSLELLPEEVYRVESTGAIVNLSSSITLIYLYCSWLPSDGYFKPSPRWDKETGTLYLPKSCPLQPIQVQGDKKFLKNIACLEACKQLHNIGALTDNLVPDIVVEEAEVDEFENEPYNEEQPSYVPPQLINHFSKDDKTIYHCYLIELKQNFSYDISVRDIVLATRSELDPEIGSTQFEMCFDRGSLSINLRRIGAVHLSPNEVLLCKTFQVTILKILVDHNIDKLAASVKSLDKLYLDDDLEIDYLLLPATAIQHRPAVIDWVSITSVNPSKITCKKHSPKVWTKNGLVCPCILQDSLVYTPHNGRIYITTNIMELDGNSPLELRDGGITTYKKYYEEKHATQLCFEHQQLLNARHIFLVKNYSHGRRQEKDREAGKNFVELPPELCCIIMSPISISTLYSFSFVPSIMHRLQSLLGASNLKKMYLDHCMQHEIQTVKVLEAITTKRCKEPFHYESLETLGDSFLKYAASKELFKSYQNLHEGLLSVKRTKIISNAALSKFGCNCGLPGFIRNAPFEPHTWLIPGDKSESFKLKEELNSNGSKIYVSGKQKLKRKIIADVVEALIGAFLTSGGEKAALLFMDWIGIKVNFNIVPYERHLSIQPEKLVNVNFLESLLKYSFHDRSLLVEALTHGSYMLPEIPSCYQRLEFLGDSILDYLITMHLYEKYPGLSPGQLTDMRSASVNNDCYAWSAIKAGLHKHILHASQELQKHIFNTLNIFRKLASSTTFGWECETSFPKVLGDIIESLAGAILVDSGYNKEVVWQSISPLLEPLITPETLKLHPVRELTELCQREGYTQNITISSKDGVICARVEVDANGVIHQYEYSGCVDKKTAKKLGCKEILKSLQKTEGK* 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0592 1378 SMART helicmild6 396 484 IPR001650 -
Lan4g0592 1378 Gene3D paz domain 801 918 - -
Lan4g0592 1378 PANTHER - 626 1374 - -
Lan4g0592 1378 CDD DEXHc_dicer 18 218 - -
Lan4g0592 1378 Pfam Dicer dimerisation domain 550 624 - -
Lan4g0592 1378 CDD RIBOc 965 1117 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 CDD SF2_C_dicer 362 492 - -
Lan4g0592 1378 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 204 IPR014001 -
Lan4g0592 1378 PANTHER DICER-RELATED 626 1374 - -
Lan4g0592 1378 Pfam PAZ domain 808 939 IPR003100 GO:0005515
Lan4g0592 1378 Pfam Helicase conserved C-terminal domain 375 482 IPR001650 -
Lan4g0592 1378 SUPERFAMILY RNase III domain-like 964 1116 IPR036389 GO:0004525|GO:0006396
Lan4g0592 1378 SMART riboneu5 1149 1304 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 SMART riboneu5 962 1118 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 Gene3D - 18 268 IPR027417 -
Lan4g0592 1378 SUPERFAMILY PAZ domain 818 914 IPR036085 GO:0005515
Lan4g0592 1378 Pfam DEAD/DEAH box helicase 20 186 IPR011545 GO:0003676|GO:0005524
Lan4g0592 1378 Gene3D - 359 515 IPR027417 -
Lan4g0592 1378 CDD RIBOc 1149 1304 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 531 IPR001650 -
Lan4g0592 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 499 IPR027417 -
Lan4g0592 1378 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 550 632 IPR005034 GO:0016891
Lan4g0592 1378 SMART ultradead3 14 224 IPR014001 -
Lan4g0592 1378 Gene3D Ribonuclease III domain 1126 1303 IPR036389 GO:0004525|GO:0006396
Lan4g0592 1378 Gene3D Ribonuclease III domain 955 1109 IPR036389 GO:0004525|GO:0006396
Lan4g0592 1378 Pfam Ribonuclease III domain 980 1098 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 Pfam Ribonuclease III domain 1170 1281 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 SUPERFAMILY RNase III domain-like 1134 1302 IPR036389 GO:0004525|GO:0006396
Lan4g0592 1378 ProSiteProfiles Ribonuclease III family domain profile. 1134 1281 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 ProSitePatterns Ribonuclease III family signature. 1170 1178 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 ProSiteProfiles PAZ domain profile. 819 916 IPR003100 GO:0005515
Lan4g0592 1378 ProSiteProfiles Ribonuclease III family domain profile. 934 1098 IPR000999 GO:0004525|GO:0006396
Lan4g0592 1378 Gene3D Dicer dimerisation domain 545 633 IPR038248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0592 Lan-Chr4 8279790 8289300 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0592 K11592 - gmx:100792448 1989.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0592 4 8279790 8289300 Lan19g0785 19 14260662 14270914 LSH