Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0785 ATGAAAAGAAGCATAGAAACCATGGGAGAAGTGACAATGGAAGTAGATACCTGCGATAAGCAGCAGCAGCAACAGCTTTCTTCTCATGCTCTTCCATTTGCAAGAAGCTATCAACTTGAAGCATTGGAGAAAGCTATCAAGGAAAACACTATAGTGTTCTTGGAAACTGGTTCTGGAAAAACTTTGATAGCTATCATGCTTCTTCGCAGCTATGCTTATCTTCTAAGAAAGCCTTCTCCTTACATTGCTGTGTTCTTGGTTCCCAAAGTTGTATTGGTTTCTCAACAAGCTGAAGCTGTGAAAGCACTCACTGATCTAAAAGTGGGAATGTATTGGGGAGAAATGGGAGTTGATTACTGGGATGCTGCCACCTGGAAGAAAGAAACTGATGAACATGAGGTTCTGGTTATGACTCCCGCAATATTGCTTAGGAGCTTGAGGCATAGCTTTCTCAAACTGAACATGATAAAGGTTTTAATAATGGACGAATGCCATCATGCTAAGGGTAGAGACCCTTACGCTTGCATCATGAGAGAGTTCTATCACGACCAATTAAAATCTGGCGTCTCTGATCTACCTCGGATTTTTGGGATGACTGCATCTCCAATTAAGTCAAAAGTCGGAAATGCTGAATGGATCTTGGCAGAAAATATTCGCAAACTCATGACTCTAATGCACTCGAAGGTATATACTTGTGCAAGTGAAACTGTCACAGAGTTCATTCCTATATCAACCCCAAAATTCAAGTTTTACACAGAACATGTAATTCCATATGTGATATTTCAAGAGTTAGCTGTTAAGCTCAAGATGTTGAAACAGCAGTATGAACTCGCCCTCAGAGATTCAGATTTTACACAATCAGCTGCAGAGTCTGCACACAAGCGAATTGAAAAGATTTTTGATGCTTTAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTCTGAAGGCTGCAGAATCCTTATCTACCGATGAATATGAATCATTTTCACGTGGTAACTCTGGGGATGGACTCGTTAAAAGTTTTAGTCTTGCTACTGTGCATCATCTCACAACTTACTTACCGTCTGGTCCTCACTGGTCGATTGGTGATAATATTAAATCTGATGAGGATATGGGGCTTTTAACCTCCAAAGTTTGCTGTCTTGTCGACTCTCTGGTTGAGTACAGGGATTTGAATAATATGAGATGTATAATTTTTGTTGAAAGGGTCGTTACAGCCGTTGTTCTTGAGACACTTTTGAATGCCTTGCTTCCAAAATACAACAGCTGGAAGACTAAGTTCATAGCAGGACACAATTCTGGGTTGAAAAATCAAACAAGGAAGACACAAAATGAAATCGTGGAAGAATTTCGTGATGGATTGGTCAACATCATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAAAGTTGCAATTTGGTTATTAGATTTGACCCATGTCCCACAGTATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGGATGCAAAATTCAGATTACTTATTAATGGTTAAGAGTGGGGATTCAGTTACACATTCAAGACTCGAGAAATACCTTGCATGCGGAGATATCATGAGGAAGGAGTCCATGCGTCAGTCTTCAATTCCTTGTGGTTTTTATGAAGAACTTCCGGAGGAAGTTTATCGCGTTGAAAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACTTTGATATACTTGTATTGCTCATGGCTCCCTTCAGATGGGTACTTTAAACCGTCTCCAAGATGGGACAAAGAGAGCGGTACACTATATCTTCCCAAGAGCTGCCCTCTGCAGCAGCCTATTCAGGTACAAGGTGACAAAAAATTCCTGAAGAATATTGCATGCCTCGAAGCATGCAAACAACTTCATAAGATTGGAGCTTTGACTGATAATCTCGTTCCTGATATCGTCATGGAAGAAGCAGAGGTGGATGCATTTGAGAGTGAACCTTACATTGAGGAGCAACCAAGTTATGTACCATATCAATTGGTCAACAGCTTCTCAAAAAATGAGAAGAAAGTCTACCACTGTTATTTAATCGAGTTGAAGCAAAATTTTAGCTATGACATCTCTGTGCGCGACATTGTGCTTGCAACAAGAAATGAGCTTGATCCAGAAATTGGAAGCACACAATTTGAAATGTGCTTTGACCGGGGTAGCCTGTCGGTGAACTTGAGATGCTTTGGAACTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAAAATTCCAAGTCACTATTCTCAAGACACTTGTAGATCATAATATAGATAAGTTGGCAGCTAGTTTAAAATCTTTAAATAAACTCTATTTGGATGATGATCTTGAGATTGATTATCTTCTGCTACCAGCCACTGCCATACAGCATAGACCTGCTATAATTGATTGGCTTTCCATTACCTCCTCCGATCCATCTAAAATTACGTGTGAGAAGCATTCTCCAAAAGTATGGACGAAAAATGGTCTAGTGTGCCCTTGCGTGCTACAAGACTCTTTGGTTTATACTCCTCATAATGGTCATATTTATATGACCACTAATATAATGGAATTGGATGGGAACTCAACTCTAGAACTAAAGGATGGTGGAGTTACTACGTACAAGAAATACTATGAAGAAAAGCATGACACTCAATTGCGTTTTGAACATCAACGCCTCCTTAATGCAAGACACATTTTTCTCGTTAAAAATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGAAGCAAGGAAGAACTTTGTTGAACTACCTCCTGAGTTGTGCTGTATAATCATGTCACCGATATCAGTTAGTACGATTTATTCCTTCTCATTTGTTCCGTCAATTATGCATCGACTTGAGTCATTGTTAGGAGCCTACAACTTGAAAAAGACTTATTTGGACCATTGCATGCAAAATGAGATTCAAACAGTCAAGGTTTTGGAAGCAATTACTACAAAAAGATGCAAAGAGCCCTTTCATTATGAGTCTCTGGAGACTCTTGGAGATTCTTTTCTAAAATATGCAGCCAGTAAGGAGCTGTTTAAATCCTACCAAAATCTTCACGAAGGTCTCCTTACTATGAAGAGGACAAAGATAATTTCTAATGCTGCCCTCAGTAAGTTTGGGTGCAATTGCGGACTTCCGGGATTCATACGAAATGCGCCTTTTGATCCTCATACCTGGCTTATTCCTGGTGATAAATCAGAAAGTTTTAAATTAAAAGAGGAGTTGGATTCCAAGAGGGGGAAAATTTATGTTAGTGGAGAACGAAAATTAAAACGTAAGATTATTGCTGATGTTGTAGAGGCACTAATTGGTGCATTCCTTATCAATGGTGGTGAAAATGCTGCATTGTTGTTTATGGATTGGGTAGGCATTAAAGTTAATTTTGACATTATACCCTACGAGAGGCACTTAACCAATCAACCAGAGAAGCTTGTTAATGTCAACTTTCTAGAATCTTTATTGAAGTACTCATTCCGCGACCGTTCTCTTTTAGTGGAAGCTCTGACTCATGGCTCTTACATGCTGCCTGAAATCCCTAGTTGTTATCAGCGACTAGAATTTCTCGGAGACTCAATACTGGATTATCTCATTACTATGCATTTATATGAGAAATATCCCGGCTTGTCACCAGGGCAGCTAACTGACATGAGATCAGCCTCTGTAAATAATGATTGTTATGCATGGTCCGCCATTAAGGCTGGGTTGCATAAACACGTACTCCATGCGTCACAAGAACTCCACAAACACATCTTCAGCATACTTAATACCTTCGAAAAGTTGGCTTCATCAACAACTTTTGGATGGGAATCTGAGACATCACTTCCCAAGGTACTTGGAGACATTATAGAGTCTCTAGCTGGAGCAATTCTTGTTGATTCAAGTTACAATAAGGAGGTTGTGTGGCAAAGCATAAGGCCACTTTTGGAACCCCTTATCACACCCGAAACATTGAAACTACACCCGGTTCGAGAGTTGACCGAGCTATGCCAAAGAGAAGGTTACACTCAGAGCATTACCTTTTCCAGCAAGGATGGTGTTATTTGTGCTAGAGTTGAGGTAGATGCAAATGGGGTCATGCACCAATATGAGTACAGTGGTTGTGTGAATAAGCCAACAGCCAAAAAGTTAGCCTGCAAGGAAATTTTGAAGTCATTGCAGAACATAGAAAGCAAATGA 4188 0.4007 MKRSIETMGEVTMEVDTCDKQQQQQLSSHALPFARSYQLEALEKAIKENTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPYIAVFLVPKVVLVSQQAEAVKALTDLKVGMYWGEMGVDYWDAATWKKETDEHEVLVMTPAILLRSLRHSFLKLNMIKVLIMDECHHAKGRDPYACIMREFYHDQLKSGVSDLPRIFGMTASPIKSKVGNAEWILAENIRKLMTLMHSKVYTCASETVTEFIPISTPKFKFYTEHVIPYVIFQELAVKLKMLKQQYELALRDSDFTQSAAESAHKRIEKIFDALMFCLDELGVWLALKAAESLSTDEYESFSRGNSGDGLVKSFSLATVHHLTTYLPSGPHWSIGDNIKSDEDMGLLTSKVCCLVDSLVEYRDLNNMRCIIFVERVVTAVVLETLLNALLPKYNSWKTKFIAGHNSGLKNQTRKTQNEIVEEFRDGLVNIIVATSILEEGLDVQSCNLVIRFDPCPTVCSFIQSRGRARMQNSDYLLMVKSGDSVTHSRLEKYLACGDIMRKESMRQSSIPCGFYEELPEEVYRVESTGAIVNLSSSITLIYLYCSWLPSDGYFKPSPRWDKESGTLYLPKSCPLQQPIQVQGDKKFLKNIACLEACKQLHKIGALTDNLVPDIVMEEAEVDAFESEPYIEEQPSYVPYQLVNSFSKNEKKVYHCYLIELKQNFSYDISVRDIVLATRNELDPEIGSTQFEMCFDRGSLSVNLRCFGTVHLSPNEVLLCKKFQVTILKTLVDHNIDKLAASLKSLNKLYLDDDLEIDYLLLPATAIQHRPAIIDWLSITSSDPSKITCEKHSPKVWTKNGLVCPCVLQDSLVYTPHNGHIYMTTNIMELDGNSTLELKDGGVTTYKKYYEEKHDTQLRFEHQRLLNARHIFLVKNYSHGRRQEKDREARKNFVELPPELCCIIMSPISVSTIYSFSFVPSIMHRLESLLGAYNLKKTYLDHCMQNEIQTVKVLEAITTKRCKEPFHYESLETLGDSFLKYAASKELFKSYQNLHEGLLTMKRTKIISNAALSKFGCNCGLPGFIRNAPFDPHTWLIPGDKSESFKLKEELDSKRGKIYVSGERKLKRKIIADVVEALIGAFLINGGENAALLFMDWVGIKVNFDIIPYERHLTNQPEKLVNVNFLESLLKYSFRDRSLLVEALTHGSYMLPEIPSCYQRLEFLGDSILDYLITMHLYEKYPGLSPGQLTDMRSASVNNDCYAWSAIKAGLHKHVLHASQELHKHIFSILNTFEKLASSTTFGWESETSLPKVLGDIIESLAGAILVDSSYNKEVVWQSIRPLLEPLITPETLKLHPVRELTELCQREGYTQSITFSSKDGVICARVEVDANGVMHQYEYSGCVNKPTAKKLACKEILKSLQNIESK* 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0785 1395 Pfam Dicer dimerisation domain 566 641 - -
Lan19g0785 1395 Gene3D Dicer dimerisation domain 561 650 IPR038248 -
Lan19g0785 1395 CDD DEXHc_dicer 34 234 - -
Lan19g0785 1395 SUPERFAMILY dsRNA-binding domain-like 1280 1391 - -
Lan19g0785 1395 SMART PAZ_2_a_3 793 959 IPR003100 GO:0005515
Lan19g0785 1395 Gene3D - 34 282 IPR027417 -
Lan19g0785 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 515 IPR027417 -
Lan19g0785 1395 SUPERFAMILY PAZ domain 835 931 IPR036085 GO:0005515
Lan19g0785 1395 Pfam DEAD/DEAH box helicase 36 201 IPR011545 GO:0003676|GO:0005524
Lan19g0785 1395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 220 IPR014001 -
Lan19g0785 1395 SUPERFAMILY RNase III domain-like 981 1134 IPR036389 GO:0004525|GO:0006396
Lan19g0785 1395 CDD SF2_C_dicer 378 508 - -
Lan19g0785 1395 ProSiteProfiles Ribonuclease III family domain profile. 983 1115 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 547 IPR001650 -
Lan19g0785 1395 ProSiteProfiles Ribonuclease III family domain profile. 1151 1298 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 CDD RIBOc 1166 1321 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 Pfam PAZ domain 824 956 IPR003100 GO:0005515
Lan19g0785 1395 SUPERFAMILY RNase III domain-like 1151 1319 IPR036389 GO:0004525|GO:0006396
Lan19g0785 1395 Pfam Ribonuclease III domain 997 1115 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 Pfam Ribonuclease III domain 1187 1297 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 Gene3D - 373 530 IPR027417 -
Lan19g0785 1395 ProSiteProfiles PAZ domain profile. 836 933 IPR003100 GO:0005515
Lan19g0785 1395 CDD RIBOc 982 1125 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 Gene3D Ribonuclease III domain 968 1125 IPR036389 GO:0004525|GO:0006396
Lan19g0785 1395 Gene3D Ribonuclease III domain 1141 1320 IPR036389 GO:0004525|GO:0006396
Lan19g0785 1395 SMART helicmild6 409 500 IPR001650 -
Lan19g0785 1395 SMART riboneu5 979 1135 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 SMART riboneu5 1166 1321 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 PANTHER DICER-RELATED 643 1390 - -
Lan19g0785 1395 ProSitePatterns Ribonuclease III family signature. 1187 1195 IPR000999 GO:0004525|GO:0006396
Lan19g0785 1395 Gene3D paz domain 819 935 - -
Lan19g0785 1395 SMART ultradead3 30 240 IPR014001 -
Lan19g0785 1395 Coils Coil 261 281 - -
Lan19g0785 1395 Pfam Helicase conserved C-terminal domain 391 498 IPR001650 -
Lan19g0785 1395 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 566 649 IPR005034 GO:0016891
Lan19g0785 1395 PANTHER - 643 1390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0785 Lan-Chr19 14260662 14270914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0785 K11592 - gmx:100792448 2022.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0592 4 8279790 8289300 Lan19g0785 19 14260662 14270914 LSH