Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0213 ATGGATTCATCAACATTACTATGCAACATTATTCTCTTCTTCTTCCTCTTCTCTTTAACCCACTCTTCAAAACTCAACCACAATAACAAAACCACAATCTCACTCTCATTCCCCTTAACCTCTCTTCCCCTCTCCACAAACATTACCTCAAAAATGTTCACTACTTCTCTCTCATCCACTAGTAATAACTACAACTTCAAGTCCAGTTTCAAATACTCAATGGCCCTTATAGTCTCCCTTCCAATTGGGACACCACCCCAAATTCAACAAATGGTTTTAGACACTGGAAGTCAACTCTCTTGGATTCAATGCCACAATAAGGTACCCAAAAAACAACACCCTCCAACGCCGTCGTTTGATCCTTCTCTCTCTTCCACTTTCTCTCCCCTCCCTTGTACTCACCCTGTTTGTAAGCCTCTCATTCCCGATTTTACCCTCCCCACTTCCTGCGACCAGAACCGTTTATGCCACTACTCGTACTTCTACGCTGATGGAACCTACGCTGAGGGTAATCTCGTCAGAGAGAAATTCACTTTCTCACCTTCCGTAATTACCCCTCCTCTCATTCTCGGTTGCGCTACAGAATCCACCGATCCCAGGGGCATTCTGGGAATGAACCTAGGACGGTTATCTTTCACTTCCCAAGCTAAAGTTAATAAATTCTCATACTGTGTTCCAACTAGGAGAACCCGACCCGGACCCGTTCCAACCGGGTCGTTCTACCTTGGTAATAACCCGAATTCTCTCGGGTTCAAATATATCCAAATGTTGACTTTTTCTCAAAGTCAACGCATGCCGAATCTGGACCCTTTAGCTTACACCGTTGCATTACAAGGGATACGAATCCAAGGGAAGAAACTAAACATTTCTCAATCGGTTTTCCGACCCGATTCTGGCGGGTCGGGTCAAACCATGGTTGATTCAGGATCCGAATTCACTTACCTCGTTGACGAGGCTTATAACAAGATGAAGGAGGAAGTGATTAGAATTGTGGGGCCCAGGATGAAGAAGGATTACGTGTACGGTGATGTTGCTGACATGTGTTTCGATCGTGGTTACGTAATTGAGATCGAACGGTTGATAGGGGGTATGGTTTTTGAATTCGAGAAAGGAGTGGAGATAGTGGTTCCAAAAGAAAGGGTACTTGCTGACGTGGGTGGTGGGGTCCACTGTGTAGGAATTGGGAATTCTGATAAATTGGGTGCGGCTAGTAACATTATTGGGAATTTTCATCAGCAGAATATGTGGGTGGAGTTTGATGTAGCCAATCGGAGAGTGGGTTTCGGTAGAGCTGATTGTAGCAGATTAACTAAGTAA 1317 0.4465 MDSSTLLCNIILFFFLFSLTHSSKLNHNNKTTISLSFPLTSLPLSTNITSKMFTTSLSSTSNNYNFKSSFKYSMALIVSLPIGTPPQIQQMVLDTGSQLSWIQCHNKVPKKQHPPTPSFDPSLSSTFSPLPCTHPVCKPLIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSPSVITPPLILGCATESTDPRGILGMNLGRLSFTSQAKVNKFSYCVPTRRTRPGPVPTGSFYLGNNPNSLGFKYIQMLTFSQSQRMPNLDPLAYTVALQGIRIQGKKLNISQSVFRPDSGGSGQTMVDSGSEFTYLVDEAYNKMKEEVIRIVGPRMKKDYVYGDVADMCFDRGYVIEIERLIGGMVFEFEKGVEIVVPKERVLADVGGGVHCVGIGNSDKLGAASNIIGNFHQQNMWVEFDVANRRVGFGRADCSRLTK* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0213 438 Gene3D Acid Proteases 241 438 IPR021109 -
Lan4g0213 438 PANTHER ASPARTYL PROTEASE-RELATED 11 438 IPR001461 GO:0004190|GO:0006508
Lan4g0213 438 CDD pepsin_A_like_plant 77 433 IPR034161 -
Lan4g0213 438 Gene3D Acid Proteases 53 240 IPR021109 -
Lan4g0213 438 SUPERFAMILY Acid proteases 77 437 IPR021109 -
Lan4g0213 438 Pfam Xylanase inhibitor C-terminal 272 429 IPR032799 -
Lan4g0213 438 ProSiteProfiles Peptidase family A1 domain profile. 76 429 IPR033121 -
Lan4g0213 438 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 11 438 - -
Lan4g0213 438 Pfam Xylanase inhibitor N-terminal 77 233 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0213 Lan-Chr4 3529708 3531443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0213 78 438 Miscellaneous Gene Families AT1G44130 23.980 4.63e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0213 - - aip:107631248 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0213 4 3529708 3531443 Lan11g0314 11 2041428 2043270 PCT
Lan11g0314 11 2041428 2043270 Lan4g0213 4 3529708 3531443 PCT