Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1608 ATGTCTCTCCTAACCCCCACTGAGTTACAGAAGATTTTTGAGAAGATGGACATGAATGGTGATGGCTTTGTTAGCCTTGAAGAGCTTAATTGGCTTCTTCAGAAGATTGGTTTCCATTTTAGCATAGATGAGGTAGAATCTATTGTTGAAAAAAAGAGCCTTGACTTGAGTGAGTTTTTGTACTTTTACAACTCTATATCTAAGGAGAACAATGATGAGATTAGAAGTGGTGATGAAAATGATCATGATCTCGTGGAAACTTTCAAAGTGTTTGATATTGATGGTGATGGATTTATTACAAGCCAAGAATTGGAGTGTGTTTTGAAGAGGCTTGGTTTGTGGGATGGGAAAGATTGCAGAAGCATGATTTTCTTCTATGATACCAATTTGGATGGACAACTTGATTTTGAGGAATTCAAGAACATGATGTTGCTTACCATTTCATGA 447 0.3647 MSLLTPTELQKIFEKMDMNGDGFVSLEELNWLLQKIGFHFSIDEVESIVEKKSLDLSEFLYFYNSISKENNDEIRSGDENDHDLVETFKVFDIDGDGFITSQELECVLKRLGLWDGKDCRSMIFFYDTNLDGQLDFEEFKNMMLLTIS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1608 148 SMART efh_1 8 36 IPR002048 GO:0005509
Lan3g1608 148 SMART efh_1 83 111 IPR002048 GO:0005509
Lan3g1608 148 SMART efh_1 118 146 IPR002048 GO:0005509
Lan3g1608 148 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 147 - -
Lan3g1608 148 SUPERFAMILY EF-hand 8 144 IPR011992 -
Lan3g1608 148 Gene3D - 73 144 - -
Lan3g1608 148 ProSiteProfiles EF-hand calcium-binding domain profile. 117 148 IPR002048 GO:0005509
Lan3g1608 148 Pfam EF hand 84 111 IPR002048 GO:0005509
Lan3g1608 148 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lan3g1608 148 Pfam EF hand 126 143 IPR002048 GO:0005509
Lan3g1608 148 Pfam EF hand 9 29 IPR002048 GO:0005509
Lan3g1608 148 CDD EFh 83 143 IPR002048 GO:0005509
Lan3g1608 148 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lan3g1608 148 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 147 - -
Lan3g1608 148 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Lan3g1608 148 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Lan3g1608 148 Gene3D - 6 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1608 Lan-Chr3 27809973 27810557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1608 2 144 EF-hand Containing Proteins AT1G21550 46.000 2.17e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1608 K13448 - gmx:100500561 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0751 15 16600091 16600971 Lan3g1608 3 27809973 27810557 LSH