Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1550 ATGAAAGTTTCAGCAACTTGCTTTAGCAGGCACAACTATGTGCCTTCCTCTCGGTCGTTGTCTTCATTGCCATGGATATCTCCACTTAAGTTAAAAAAAGCTGCAGAACCTAAACCAGATCCTCCCCCTGAAGCACCTATCGAAACTTGGAAGAAGCGCAATTTTCTCTCTCATGAGACTGCTATCAACTTGATCAAACGAGAGAAAGATCCACAACATGCCTTGAAAATATTTAACATGGTATCAGAACAAAAGGGTTTCAATCACAATAATGCTACATATGCAACAATTCTCGAAAAGCTTGCTCAGTCAAAGAAGTTCCAAGCCGTTGATCGAGTGCTACATCAAATGACCTATGAAGCTTGCAAGTTTCATGAGGGTATATTTGTTAACCTCATGAAGCATTTTTCGAAATCCTCTATGTATGAAAAAGTGCTTCAAACATTTTTCTCCATTAAGCCAATAGTTCGTGAAAAACCATCTCCGAAAGCCATCAGCACTTGTCTCAATCTCCTGGTTGATTCTAATCAGGTTGATTTGGTACGACAGTTGCTCTTGCATGCCAAAAGGAGTCTAACGCATAAGCCAAACGTCTGCGTATTTAATATTTTAGTGAAGTACCACTGCAAAAATGGAGACCTTGACTCTGCCTTTGAAGTTGTAGAAGAAATGAGGAACTCAAAGTTTTCCTACCCTAATTTAATTACATACTCAACCCTGATGGATGGCCTCTGTCAAAATGGAAGACTCAAAGAAGCTTTTGAAATTTTTGAGGAAATGGTCTCAAAGGATAGGATTGTTCCTGATCCAATGACTTACAATGTTTTGATCAATGGATTTTGCTGCGGAGGTAAACCTGATCGTGCTAGAAATGTGATTGAGTTTATGAAAAATAATGGATGCCGTCCTAATGTAATTAATTACTCCGCCCTTGTAAATGGTTTATGTAAAGTGGGGAAACTGCAAGATGCTAAAGAAGTTTTTGCTGAGATGAGGAGCTCTGGTTTGAAGCCTGATACAGTTTGCTACACTTCTTTGATCAATTATGTCTGTAGGAATGGGAAAATTGATGAAGCTATAGAGTTGCTTAAAGAAATGAAGGAAAATGAATGCCAGCCTGATACCGTTACATTTAATGTGATACTTGGAGGTTTGTGCAGAGAAGGTAGATTTGAGGAGGCTCTAGATATGGTTGAGAATCTTCCACATGAGGGTGTCTATTTGAACAAAGGCAGTTACAGGATAGTGCTAAATTCCTTAACCCAAAATTGTGACTTGAACAAGGCAAAGAAATTATTAGGACTAATGCTAGGTAGGGGATTTCTACCCCATTATGCTACCTCAAATGAATTATTGGTTTCTCTTTGTAAGGCTGGAATGGCTGATGATGCTGCAATGGCTCTATTTGGCTTGGTGGAGATGGGATTCCAGCCAGGACCTGATTCTTGGGAACTTCTGATTGAGTTAATTTGCAGAGAAAGGAAGTTACTGTATGTTTTTGAGCTACTTGATGAGTTAGTGATCACAAATTCTTGA 1536 0.3906 MKVSATCFSRHNYVPSSRSLSSLPWISPLKLKKAAEPKPDPPPEAPIETWKKRNFLSHETAINLIKREKDPQHALKIFNMVSEQKGFNHNNATYATILEKLAQSKKFQAVDRVLHQMTYEACKFHEGIFVNLMKHFSKSSMYEKVLQTFFSIKPIVREKPSPKAISTCLNLLVDSNQVDLVRQLLLHAKRSLTHKPNVCVFNILVKYHCKNGDLDSAFEVVEEMRNSKFSYPNLITYSTLMDGLCQNGRLKEAFEIFEEMVSKDRIVPDPMTYNVLINGFCCGGKPDRARNVIEFMKNNGCRPNVINYSALVNGLCKVGKLQDAKEVFAEMRSSGLKPDTVCYTSLINYVCRNGKIDEAIELLKEMKENECQPDTVTFNVILGGLCREGRFEEALDMVENLPHEGVYLNKGSYRIVLNSLTQNCDLNKAKKLLGLMLGRGFLPHYATSNELLVSLCKAGMADDAAMALFGLVEMGFQPGPDSWELLIELICRERKLLYVFELLDELVITNS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1550 511 Pfam PPR repeat 194 225 IPR002885 -
Lan3g1550 511 Pfam PPR repeat 299 332 IPR002885 -
Lan3g1550 511 Gene3D Tetratricopeptide repeat domain 264 332 IPR011990 GO:0005515
Lan3g1550 511 Gene3D Tetratricopeptide repeat domain 26 153 IPR011990 GO:0005515
Lan3g1550 511 Gene3D Tetratricopeptide repeat domain 333 402 IPR011990 GO:0005515
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Lan3g1550 511 SUPERFAMILY TPR-like 161 399 IPR011990 GO:0005515
Lan3g1550 511 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 19 509 - -
Lan3g1550 511 Gene3D Tetratricopeptide repeat domain 157 263 IPR011990 GO:0005515
Lan3g1550 511 Pfam PPR repeat family 232 281 IPR002885 -
Lan3g1550 511 Pfam PPR repeat family 338 387 IPR002885 -
Lan3g1550 511 Pfam PPR repeat 412 441 IPR002885 -
Lan3g1550 511 Gene3D Tetratricopeptide repeat domain 403 510 IPR011990 GO:0005515
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lan3g1550 511 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 19 509 - -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 412 443 IPR002885 -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 341 375 IPR002885 -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Lan3g1550 511 TIGRFAM PPR: pentatricopeptide repeat domain 308 340 IPR002885 -
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Lan3g1550 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1550 197 507 Glycosyltransferase AT1G05670 27.653 1.81e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1550 - - mtr:MTR_3g100600 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0888 15 18161402 18166541 Lan3g1550 3 26989002 26992043 LSH
Lan14g0686 14 13816807 13821936 Lan3g1550 3 26989002 26992043 LSH