LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan3g1523	ATGGCGGTTTCCGATACTCTAAACGGTGGCGCTTCTACACCGCCGCCTCCACCGGCACCAGAATACGGGATCACAAAGCCTCTCTCTCTAGCCGGTCCCACCGCTGCTGATTTCAACCGTAATCTAGAATTAGAGAAGTTTTTGGTTGATTCGGGGCTTTATGAGAGTGATGAAGAAACTGCGACCAGACAAGAGGTTCTTCGCCGCCTTGATCAGATTGTAAAAAGCTGGGTGAAGCAGTTGACACGCCTGCGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGCTCTTATCGATTAGGGGTGCATGGACCTGGAGCTGACATAGACACTTTGTGTGTTGGTCCTTCTTATGTGAATCGAGAGGAGGACTTCTTTATGATTTTGCATAACATTCTTGCTGAAATGGAAGAAGTTACTGAACTTCATCCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTACAGATTTGCTGTATGCAAGTATATCTCTTTTGGTTGTCCCAGAAGACCTAGATATCTCAGATGGTTCTGTGCTGCATGATGTTGATGAGCCAACTGTTCGAAGTCTTAATGGCTGCCGCGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAAGTGCACTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGCGGTGTAAATTGGGCCCTTTTGGTTGCTCGAGTTTGTCAGCTTTACCCAAATGCGATCCCTAGTATGTTGGTCTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCTAATCCTGTAATGCTATGCTCTATAGAAGAAAACGAACTGGGTTTCCCTATATGGGATCCTCGTAGAAACCCCCGGGACAGATTTCACATTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGTTACAATGTCTCAGCAAGCACTCTTCGTGTTATGTTGGAACAGCTACACCATGGCAACATGATCTGTGACGAAATTGAGCTTAACAAGGCCCAGTGGAGTGCACTTTTCCAGCCATATAACTTTTTTGAGGCCTACAAAAACTATTTACAAGTGGACATAATTGCAGTAGATGCTAATGATTTACTACCGTGGAAGGGTTGGATAGAATCTCGGTTGAGACAACTTACCCTCAAGATAGAGCGGGATACGAATGGGATATTGCAGTGTCATCCTTATCCTCATGATTATGTGGATACATCAAAGCCGTGTACACATTCTGCATTTTTCATGGGTTTGCAAAGAAAAGAGGGGGTAAGAGGTCAAGAGGGCCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTACGCATATTGGAAGCCAGGGATGGAAATTTATGTTTCCCATGTTCGTCGGAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTATAAACGTACTCGGATTCCAAGGCATATGAGCCATTCAGCTGAAAAAGTGGATGAGGGTGCCACAAGGTGCTATTCTGGGTCTACTGAAAGATGCATCAAGAGGAAAAATGATGCTGAAATGATGGATGTGAACCCAAGAAAACCAGAAAAACGAGCCTCTATTAGCCCACAGAGGCTAGAGTGTTTTTCTCCTGAAAGTTGTAGCACTAGATCAGGCGGTACATCTCAAATGAGTATTGATTGTATTGAAGGGGTTAAATTAGATGGTTCAACAATGAAAGATTCTAACAGCAATTGTCAAATTAAGTCATCTGATGGACTCGTAAGAAGTGGAGTAAGTGCTGAAAGACTAGACACGCAGATTACTGAAACAGGCGTTGTTGACTCCACACTTTCTAGGCAGAAATCAAGGAGTCCAGAAGTTCGGAATGTGAGTGGAGTCAACGGGAACAAAGCTCAGGATCTGGATTTAGACTGCTTGGAGGATGTAGAAACTGCATCGACCGAAACCTTGACAAACTGTAAAGAGGGTGCTCCGGATATGGATCAACCACTAGACAAAGCTTGTAGTTTCACTACAAGGGCTGATATTTCAGATTATGTGCCCAATGCCAGCACCTAG	2118	0.4377	MAVSDTLNGGASTPPPPPAPEYGITKPLSLAGPTAADFNRNLELEKFLVDSGLYESDEETATRQEVLRRLDQIVKSWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFMILHNILAEMEEVTELHPVPDAHVPVMKFKFQGISTDLLYASISLLVVPEDLDISDGSVLHDVDEPTVRSLNGCRVADQILKLVPNVEHFRSALRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMLEQLHHGNMICDEIELNKAQWSALFQPYNFFEAYKNYLQVDIIAVDANDLLPWKGWIESRLRQLTLKIERDTNGILQCHPYPHDYVDTSKPCTHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYAYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRIPRHMSHSAEKVDEGATRCYSGSTERCIKRKNDAEMMDVNPRKPEKRASISPQRLECFSPESCSTRSGGTSQMSIDCIEGVKLDGSTMKDSNSNCQIKSSDGLVRSGVSAERLDTQITETGVVDSTLSRQKSRSPEVRNVSGVNGNKAQDLDLDCLEDVETASTETLTNCKEGAPDMDQPLDKACSFTTRADISDYVPNAST*	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan3g1523	705	Pfam	Poly(A) polymerase central domain	23	366	IPR007012	GO:0004652\|GO:0043631
	Lan3g1523	705	Pfam	Poly(A) polymerase predicted RNA binding domain	432	502	IPR007010	GO:0003723\|GO:0043631
	Lan3g1523	705	Pfam	Poly(A) polymerase predicted RNA binding domain	369	428	IPR007010	GO:0003723\|GO:0043631
	Lan3g1523	705	Gene3D	Beta Polymerase, domain 2	55	211	IPR043519	-
	Lan3g1523	705	SUPERFAMILY	Nucleotidyltransferase	20	216	IPR043519	-
	Lan3g1523	705	SUPERFAMILY	PAP/OAS1 substrate-binding domain	218	367	-	-
	Lan3g1523	705	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lan3g1523	705	Pfam	Nucleotidyltransferase domain	93	169	IPR002934	GO:0016779
	Lan3g1523	705	Gene3D	Poly(A) polymerase predicted RNA binding domain	369	485	-	-
	Lan3g1523	705	Gene3D	-	23	365	-	-
	Lan3g1523	705	PANTHER	POLY A POLYMERASE	19	601	-	-
	Lan3g1523	705	SUPERFAMILY	PAP/Archaeal CCA-adding enzyme, C-terminal domain	368	496	IPR011068	GO:0003723\|GO:0016779\|GO:0031123
	Lan3g1523	705	PANTHER	NUCLEAR POLY(A) POLYMERASE 4	19	601	-	-
	Lan3g1523	705	CDD	NT_PAP_TUTase	63	217	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan3g1523	Lan-Chr3	26680964	26687589	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan3g1523	K14376		-	gmx:100802620	1162.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan15g0936	15	18687998	18694341	Lan3g1523	3	26680964	26687589	LSH