Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0936 ATGGCGGTTTCCGATACTCCCAACGGTGCCGCTTTTACACCACCGCCCCCACCTACGCCAGAATACGGGATCACAAAGCCTATCTCTCTTGCCGGTCCCACCGATGCTGATTTCAACCGTAACCTAGAATTGGAGAAGTTCTTGGTTGATTCGGGGCTTTACGAGAGCGATGAAGAAACTGCAACTAGACAAGAGGTTCTTCGCCGCCTTGATCAGGTTGTAAAAAGCTGGGTGAAGCAGTTGACACGCCTGCGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTGATTTTCACTTTTGGTTCTTATCGACTAGGGGTGCATGGGCCTGGAGCTGACATAGACACTTTGTGTGTTGGTCCTTCTTATGTGAATCGAGAGGAAGACTTCTTTATGCTTTTGCATAACATCCTCGCTGAAATGGAAGAAGTTACTGAACTCCATCCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGCATATCTCATTTAGTTGTCCCAGAAGACCTGGATATCTCAGATGGTTCTGTTCTGCATGATGTTGACGAGCCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTGCACTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACCGGATTCCTTGGTGGTGTAAATTGGGCCCTTTTGGTTGCTCGAGTTTGCCAGCTTTACCCAAATGCAATCCCTAGTATGTTGGTCACTCGATTCTTTAGGGTCTATACACAGTGGCGATGGCCTAACCCTGTAATGCTATGCTCTATTGAAGAAAATGAACTGGGTTTCCCTATATGGGATCCTCGTAGAAACCCCCGAGACAGATTTCACATTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGTTACAATGTCTCAGCAAGCACTCTTCGTGTTATGATGGAACAGTTACGCCATGGCAACAGGATCTGTGACGAAATTGAGCTTAACAAAGCTCAGTGGAGTGCACTTTTCCAGCCATATCTATTTTTTGAGGCGTACAACAACTATTTACAAGTGGACATAATTGCAGTAGACGCTGATGATTTACTACCGTGGAAGGGTTGGATAGAGTCTCGGTTGAGACAGCTTACCCTCAAGATAGAACGGGATACGAATGGGATATTGCAGTGTCATCCTTATCCTCATGAGTATGCAGATACATTGAAGCCTTGTGCACATTCTTCATTTTTCATGGGCTTGCAAAGGAAAGAGGGGGTAAAAGGTCAAGAAGGCCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACATGAAATAAATATGTATGCATATTGGAAGCCAGGGATGGAAATTTATGTTTCTCATGTTCGTCGGAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTATAGACGTACTCGGATTCCAAGACATATGAGCCATTTAGCTGAAAAAGCAGATGAGGATGCTACAAAGTGCTATTCTGGGTCTGCTGAGAGATGCATCAAGAGGAAAAATGACACTGAAATTATGGATGTGAAGCCAAGCAAACCAGAAAAACGAGCCTCTGTTAGCCCACAGAGGCTAGAGTGTTTTTCTCCTGAAAGTTGTACCAGTAGATCAGGTGGTACATCTCAAATGAGTATTGATTGTATTGAAGGGGTTAGGTTAGATGGTTCAACAATGAAAGATTCCGACAGCATTTGTGAAATTAAGTCATCTGATAGTCTTGTAGGAAGTGCAATATGTGCTGAAAGACCTGACTTGCAGATTAGTGAAACAGGTGGTGTTGACTCCACATTTGATAGGCAGAAATCAAGGAGTCCAGACGTTCAGAATGAGAATGGAGTCAATGGGAATAAAGCTCAGGATCTGGATTTAGACTGCTTGGAGGGTGTAGAAACTGCATCAACTGCCCTTGATATGGATCAACCACTAGACAAAGCTTGTAATTTCACAACAGGGGCTGATCTTTCAGACTATGTACCTAGTGCCAGCACCCAGAACCTCAATTGCAAGATGTCAGACTTGGAAGTGTTGTATAAACTTGAGACGGATTCTGAGTTGAAGTTAGGCAGTGAAAACAAATGGGCCGATGCAAATGATGGCAGTGAAAACAAAGTGAGGTTTTGGGGATGGTGCTGTCATGATCATGTACGCACTGCATGA 2256 0.4371 MAVSDTPNGAAFTPPPPPTPEYGITKPISLAGPTDADFNRNLELEKFLVDSGLYESDEETATRQEVLRRLDQVVKSWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFMLLHNILAEMEEVTELHPVPDAHVPVMKFKFQGISIDLLYASISHLVVPEDLDISDGSVLHDVDEPTVRSLNGCRVADQILKLVPNVEHFRTALRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVTRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMMEQLRHGNRICDEIELNKAQWSALFQPYLFFEAYNNYLQVDIIAVDADDLLPWKGWIESRLRQLTLKIERDTNGILQCHPYPHEYADTLKPCAHSSFFMGLQRKEGVKGQEGQQFDIRGTVDEFRHEINMYAYWKPGMEIYVSHVRRKQLPAFVFPDGYRRTRIPRHMSHLAEKADEDATKCYSGSAERCIKRKNDTEIMDVKPSKPEKRASVSPQRLECFSPESCTSRSGGTSQMSIDCIEGVRLDGSTMKDSDSICEIKSSDSLVGSAICAERPDLQISETGGVDSTFDRQKSRSPDVQNENGVNGNKAQDLDLDCLEGVETASTALDMDQPLDKACNFTTGADLSDYVPSASTQNLNCKMSDLEVLYKLETDSELKLGSENKWADANDGSENKVRFWGWCCHDHVRTA* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0936 751 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 495 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lan15g0936 751 Gene3D Poly(A) polymerase predicted RNA binding domain 370 485 - -
Lan15g0936 751 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Lan15g0936 751 PANTHER POLY A POLYMERASE 4 565 - -
Lan15g0936 751 Pfam Poly(A) polymerase predicted RNA binding domain 370 428 IPR007010 GO:0003723|GO:0043631
Lan15g0936 751 Pfam Poly(A) polymerase predicted RNA binding domain 435 501 IPR007010 GO:0003723|GO:0043631
Lan15g0936 751 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Lan15g0936 751 MobiDBLite consensus disorder prediction 1 23 - -
Lan15g0936 751 PANTHER NUCLEAR POLY(A) POLYMERASE 4 4 565 - -
Lan15g0936 751 MobiDBLite consensus disorder prediction 622 651 - -
Lan15g0936 751 Pfam Nucleotidyltransferase domain 93 172 IPR002934 GO:0016779
Lan15g0936 751 SUPERFAMILY Nucleotidyltransferase 19 216 IPR043519 -
Lan15g0936 751 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0004652|GO:0043631
Lan15g0936 751 Gene3D - 23 365 - -
Lan15g0936 751 CDD NT_PAP_TUTase 63 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0936 Lan-Chr15 18687998 18694341 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0936 K14376 - gmx:100802620 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0936 15 18687998 18694341 Lan3g1523 3 26680964 26687589 LSH