Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1502 ATGGCTTTGGACGAAGAAACCACCAAGAAAGTTATACGACAAGTGGAGTTCTATTTCAGTGATAGCAATCTCCCGACGGATGTTTTTATGAGAAAAACTGTCACCGAGAGTGAAGATGGAATGGTTAGTCTTGCTTTGATTTGTTCTTTCAATAGAATGCGAAAGCATCTCAATTTGGGAGACATAAAGCCGGACCAAGTCTCGGTCGAAACTGTTGATGCTGTCGCTCAAGTTTTGAGGAATGCCGCGTCGCTTAAGATCTCCGAAGATGGGAAAAAAGTTGGCAGGGCAACTGAACTTCCAAAAGTAGAAGAGGTAATTGAGCAGGTGGAGATAAGAACACTTGCTGTATCCCCATTTGAATATGATCTGAAGCTTGAAGATGTGGAAACCTTTTTCAATCAATACGCCAAGGTCAATAGTGTCCGACTGCCCCGACATGTTGGAGACAAAAGGTTGTTCTCTGGCACTGCCCTTGTTGAATTCTCATCGGAGGAGGAAGTAGAAAAAGTCTTGAAGCAAAAGCTGGTCTATGCTGGGGCTGAGTTAGAATTGAAGCCAAAGAAGGACTTTGATGCAGAGAGAGAGAAAGAATTAGAAGCCTACGAAAAATCTCGTCCACCTCTGGGTTCTAATCGCCAAAATAACTCAAATGAAGAAGAAAGGTACTACCCTAAAGGTTTAATTATTGCCATCAAACTAAAGAGCATTTCAGATGAAATTCCTTCGAAACCAAATGGTGCTGATCAACAAGCCAATGACAGTGATGGTGTCTCCAAAACAGATGAAAAACCCTCTGAAACTACTGTTGGGGAAAGTGATCAAAAGGTGTCTGAAAATGTTAACATTGGTGAAGAAAACAATGAGGCCAAAGAAGAAAAGAAAGCTGTTAATGAAGAAAAGAGTCAAGAAACCGGTGAAAAAATTCCAGCTTCTGCTTACAAGGACAACATGGATGTTGTCTTGCGGGAGGATTTGAAGAGTATCTTTGAGAAGTTCGGTACAGTGAAGTACATTGATTTCAAGATTGGAGAAGAGTCAGGATACATCCGGTTTGATGAAGCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAGAAGGGTGGCCTGATTGTGAAGAATTTTGTTGCTATTCTAGATCCAGTGTCTGGTGAGGCCGAGAAGGAATACTGGACCTTGCTTCGTGGTAACCAAAAAGACAGGCACCAAAACTTTAAGGGTAACCGAGGAAGGGGAGGAGGAAGGCATGGTGGTAGAGGAGGAAAACATGCACGCTCTCGAGATAATAATGGAGGTGGTCGCCCGAATAAAGCTCAGAGAGTTTGA 1335 0.4292 MALDEETTKKVIRQVEFYFSDSNLPTDVFMRKTVTESEDGMVSLALICSFNRMRKHLNLGDIKPDQVSVETVDAVAQVLRNAASLKISEDGKKVGRATELPKVEEVIEQVEIRTLAVSPFEYDLKLEDVETFFNQYAKVNSVRLPRHVGDKRLFSGTALVEFSSEEEVEKVLKQKLVYAGAELELKPKKDFDAEREKELEAYEKSRPPLGSNRQNNSNEEERYYPKGLIIAIKLKSISDEIPSKPNGADQQANDSDGVSKTDEKPSETTVGESDQKVSENVNIGEENNEAKEEKKAVNEEKSQETGEKIPASAYKDNMDVVLREDLKSIFEKFGTVKYIDFKIGEESGYIRFDEAEAAQKARAAAVLSEKGGLIVKNFVAILDPVSGEAEKEYWTLLRGNQKDRHQNFKGNRGRGGGRHGGRGGKHARSRDNNGGGRPNKAQRV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1502 444 Pfam RNA binding motif 321 412 IPR014886 GO:0003723
Lan3g1502 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 198 IPR000504 GO:0003723
Lan3g1502 444 MobiDBLite consensus disorder prediction 196 221 - -
Lan3g1502 444 SUPERFAMILY "Winged helix" DNA-binding domain 4 100 IPR036390 -
Lan3g1502 444 SUPERFAMILY RNA-binding domain, RBD 323 408 IPR035979 GO:0003676
Lan3g1502 444 Gene3D - 3 104 IPR036388 -
Lan3g1502 444 PRINTS Lupus La protein signature 14 31 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lan3g1502 444 PRINTS Lupus La protein signature 40 55 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lan3g1502 444 PRINTS Lupus La protein signature 154 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lan3g1502 444 CDD LA_like_plant 7 96 - -
Lan3g1502 444 MobiDBLite consensus disorder prediction 256 270 - -
Lan3g1502 444 Gene3D - 290 412 IPR012677 -
Lan3g1502 444 PANTHER BNAANNG34180D PROTEIN 2 444 - -
Lan3g1502 444 Coils Coil 280 307 - -
Lan3g1502 444 Gene3D - 106 203 IPR012677 -
Lan3g1502 444 SUPERFAMILY RNA-binding domain, RBD 105 190 IPR035979 GO:0003676
Lan3g1502 444 MobiDBLite consensus disorder prediction 285 306 - -
Lan3g1502 444 MobiDBLite consensus disorder prediction 411 425 - -
Lan3g1502 444 ProSiteProfiles xRRM domain profile. 302 426 IPR014886 GO:0003723
Lan3g1502 444 Pfam La domain 11 81 IPR006630 -
Lan3g1502 444 ProSiteProfiles La-type HTH domain profile. 1 104 IPR006630 -
Lan3g1502 444 MobiDBLite consensus disorder prediction 401 444 - -
Lan3g1502 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Lan3g1502 444 MobiDBLite consensus disorder prediction 241 310 - -
Lan3g1502 444 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lan3g1502 444 SMART rrm1_1 312 376 IPR000504 GO:0003723
Lan3g1502 444 PANTHER LUPUS LA PROTEIN-RELATED 2 444 IPR045180 -
Lan3g1502 444 SMART la 5 97 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1502 Lan-Chr3 26542422 26546151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1502 K11090 - gmx:100786016 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0954 15 18843602 18846843 Lan3g1502 3 26542422 26546151 LSH